Gene detail information of Glyur001016s00027705 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G65700.2 | 3.00E-32 | Small nuclear ribonucleoprotein family protein |
| NR | CDY54443.1 | 2.40E-55 | BnaC02g45590D [Brassica napus] |
| Swissprot | tr|Q8VYI0|LSM8_ARATH | 6.00E-50 | Sm-like protein LSM8 {ECO:0000305} |
| trEMBL | tr|A0A078ITG9|A0A078ITG9_BRANA | 9.00E-56 | BnaC02g45590D protein {ECO:0000313|EMBL:CDY54443.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01016 | 79787 | 81855 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001016s00027705.1 | PF01423.17 | LSM | 7 | 104 | 3.60E-15 |
| Glyur001016s00027705.2 | PF01423.17 | LSM | 7 | 68 | 1.60E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 25.605 |
| SRR1783600 | control | 25.690 |
| SRR1783602 | moderate drought stress | 23.059 |
| SRR1811619 | moderate drought stress | 22.997 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 33.665 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 32.809 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 42.197 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 41.047 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 26.837 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 26.200 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 15.589 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 15.304 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 37.748 |
| SRR2868004 | Drought Stress (root) | 32.128 |
| SRR2967015 | Control (root) | 34.433 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 13.464 |
| SRR9715740 | Leaf | 20.260 |
| SRR9715741 | Leaf | 16.899 |
| SRR9715739 | Root | 10.179 |
| SRR9715742 | Root | 9.657 |
| SRR9715743 | Root | 11.776 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 45.007 |
| SRR8749028 | MeJA induced 9h | 17.762 |
| SRR8749029 | MeJA induced 9h | 45.094 |
| SRR8749030 | Uninduced | 22.730 |
| SRR8749031 | Uninduced | 19.890 |
| SRR8749032 | Uninduced | 29.800 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 42.894 |
| SRR8400027 | Control - Root | 37.880 |