Gene detail

Gene detail information of Glyur001016s00027700

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G71000.1	1.00E-34	Chaperone DnaJ-domain superfamily protein
NR	KHN32248.1	6.60E-92	DnaJ like subfamily B member 8 [Glycine soja]
COG	YP_143440.1	1.00E-16	molecular chaperone DnaJ [Thermus thermophilus HB8]
Swissprot	tr\|Q9FL54\|DNAJ6_ARATH	4.00E-15	Chaperone protein dnaJ 6
trEMBL	tr\|I1ND69\|I1ND69_SOYBN	2.00E-92	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA20G01690.1}

Sequence

Transcript Sequence

>Glyur001016s00027700.1
CTATATTGGTACAATTTCTTCAAGAACATTCCAGGGTTGGCATTGGCATGNTCCGTGGTCACAACCACAACATCCCCTTCCCAAGAGTCTCTGTTTCTCAGATATTTTCCTGCCTCGTAAAAACTTCTAGAGCATTCATCTGTAAAACCGCCCTTCCTTGAACTCCACATAAATACCACCCAGAACTTCTATATCTCCTCGTTCGCTGTCAATTTAGAACATACAATAGAGCCCATTGGGTGCAACAATTGCATGTGCCAGTGATCCAACNACAATAGAAAGGGAAAAAAAAAAGANTTCATTTTGCAGANTATTAATTAATTTTCCTTTTAAATGGTTGGAGCTTGATTGTTTCTGGTGCATGTAGAGGGTGACAATGGATGCTTACAGAGAAGGGTCGTCGTCATCTTACTACAACATTCTTGGGGTTAGCTCAGATTCTTCCATAGACCAGATAAGGCGTGCTTACAGGAAGCTTGCTATGCAATGGCATCCGGATAAGTGGACAAGAACGCCTTCTTTACTGAGTGAAGCTAAGCGCAAATTCCAGCAAATTCAAGAAGCCTATTCAGTGCTATCTGACTCCAAGAAAAGAACGATGTACGATGCAGGCTTGTATGATCCTCAAGAAGAAGAGGATGAGGGCTTCTCTGATTTTGTGGAAGAAATGGTGTCTCTTATGGCCCAAGTTAGGAGGGAGGAAAAGGAGTACGGTTTGGAGGAGTTGCAGGCAATGCTCATGGAAATGGCTGAAGGATTTGAGTTTCCTTCAATGTACTGTGGGGTACCATCGGTGATTGATGAATCCCTGTGCTTAAAGAGAGCGCGTTTTGGCACAACCGTGACTGGTGGAGAATAAAGGGTCACGTTTTTTAGTACCCAGTCTCAATTTCTATGAAACAACACGGGGTTATCGGTGGCCAATTCGGACATTAGGATTTTCTAAGTTTCACTGGTGTGAAACGGAGAGATGATACAGTGATTTAGTTATTTTGATGTTTTGACCCCTTCTATCGCGTTCAATGTGAGTTATTGGTACAAAATAGAGGCGCTTTTTGTCATTCTTTCTTTTTTTTTGATCAAAAGGAAAGAAAACAACAAGAAAAGCAAAACAAGCTACACTCTAGGCCTCTTAATCCCCATGGCATCTGCCAGTAGAGTACTAGACAGAGCAGATAGACAAAGACTCCAAATAAATGACATCCTCATATGGGGAAGAGGAAGAGGGAAAACTATCATCGTTTTGGCTTTGTAAATCATGTTCAAGGGTATTTTCATGCCCNGATGGATTTGTGAACATACCTTTTTTCTTATCTGTTTGATTGGAAAAGGCTATATTACTTGTCGTTAATTCAATCTTCTGTATATTAAATCGTTATTAGAATTAGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01016	59548	61584	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001016s00027700.1	PF00226.26	DnaJ	12	77	3.90E-25

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.131
SRR1783600	control	0.179
SRR1783602	moderate drought stress	0.783
SRR1811619	moderate drought stress	0.776

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.234
DRR006520	Root Summer glycyrrhizin high producing strain	4.616
DRR006521	Root Winter glycyrrhizin high producing strain	117.258
DRR006522	Root Winter glycyrrhizin high producing strain	113.136
DRR006523	Root Summer glycyrrhizin low producing strain	16.220
DRR006524	Root Summer glycyrrhizin low producing strain	16.415
DRR006525	Leaf Summer glycyrrhizin high producing strain	82.078
DRR006526	Leaf Summer glycyrrhizin high producing strain	80.905

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.221
SRR2868004	Drought Stress (root)	0.214
SRR2967015	Control (root)	0.166

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.353
SRR9715740	Leaf	2.904
SRR9715741	Leaf	2.694
SRR9715739	Root	0.128
SRR9715742	Root	0.089
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.031
SRR8749028	MeJA induced 9h	1.088
SRR8749029	MeJA induced 9h	0.861
SRR8749030	Uninduced	1.169
SRR8749031	Uninduced	2.088
SRR8749032	Uninduced	2.427

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.735
SRR8400027	Control - Root	0.440