Gene detail information of Glyur001016s00027697 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G01340.1 | 1.00E-51 | |
| NR | XP_003555905.1 | 1.95E-96 | PREDICTED: uncharacterized protein At1g66480-like [Glycine max] |
| Swissprot | tr|Q6NLC8|Y1648_ARATH | 4.00E-42 | Uncharacterized protein At1g66480 |
| trEMBL | tr|I1ND67|I1ND67_SOYBN | 7.00E-97 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G01670.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01016 | 35616 | 36552 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001016s00027697.1 | PF14009.1 | DUF4228 | 1 | 182 | 1.90E-26 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 25.404 |
| SRR1783600 | control | 25.392 |
| SRR1783602 | moderate drought stress | 10.597 |
| SRR1811619 | moderate drought stress | 10.745 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.040 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.286 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.303 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.295 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.907 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.759 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.254 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.126 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 20.092 |
| SRR2868004 | Drought Stress (root) | 34.037 |
| SRR2967015 | Control (root) | 16.015 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.938 |
| SRR9715740 | Leaf | 2.607 |
| SRR9715741 | Leaf | 7.941 |
| SRR9715739 | Root | 7.432 |
| SRR9715742 | Root | 5.186 |
| SRR9715743 | Root | 4.733 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 269.522 |
| SRR8749028 | MeJA induced 9h | 172.874 |
| SRR8749029 | MeJA induced 9h | 195.407 |
| SRR8749030 | Uninduced | 175.157 |
| SRR8749031 | Uninduced | 596.938 |
| SRR8749032 | Uninduced | 215.578 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 39.286 |
| SRR8400027 | Control - Root | 25.611 |