Gene detail

Gene detail information of Glyur001016s00027689

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G49750.1	3.00E-98	Leucine-rich repeat (LRR) family protein
NR	AES90113.2	0	Serine/Threonine kinase, plant-type protein, putative [Medicago truncatula]
COG	YP_004735589.1	2.00E-20	Receptor-like protein kinase [Zobellia galactanivorans]
Swissprot	tr\|Q8W3M4\|Y4744_ARATH	3.00E-102	Uncharacterized protein At4g06744 (Precursor)
trEMBL	tr\|G7JK03\|G7JK03_MEDTR	0	Serine/Threonine kinase, plant-type protein, putative {ECO:0000313\|EMBL:AES90113.2}

Sequence

Transcript Sequence

>Glyur001016s00027689.1
ATGGGAACCAAGTCCCTTTCTTTTTCATTCTTAGCATGCGCTCTCTTGCTAATTCACTTTCAACGGGTGGTTGTTGCTACCGCGCAACAAGAAGAGCTAGCAGTAGCCGGGTCAGAAAGGGAAGCACTGGAGCTAGCCGCAGTTGGAGCAGAAAGGGAAACACTTGAAATAATCATAGGCGGCGGCGGCGGTGGCGGTGGTGGTTCTGCCCCTGCTCCTTCCCCTGAACCTGAATGCCCCCCTCCACCACCTCCGCCGTGTCCCCCTCCTCCACGACAACTGAGCCGGTTGGAGAAAGCACGCCGCGTGCTTCTCAAGTTCAAAGCCAACATNATCGACACAACCGGGTACACCAAAAACTGGAACCAGAACACCGACACCTGCAAATTCAACGGAATACGATGCGCCCCGTACCCAACCTCAAACGAGAGAGCAGTCGCTGGACTGGACTTCAACCAGGCCAGGATCTGCGGTAAAANCGGCGCCTTGTCCCTCAACGGCATCTTAGACAGTATCCCAGAACTGACATTCTTCCACGTCAACTCCAACAACTTCGCCGGTACCGTCCCAAGCCAAATCACCAACTACCCTTACTTCTACGAGCTCGACCTCAGTAACAACANACTTGTCGGCGAGTTTCCAAAGGACGTGCTTCAATCCAAGAAACTAGTGTTCCTGGACCTCAGGTTCAACACCCTCAACGGCCCAATTCCCCCACAGCTTTTCCAGATGGACCTGGACGTAATTTTCATCAACAACAACGGTTTCACTCAATCTCTACCCGATAATTTCGGGTCCACACCGGCCCGGTACCTCACTTTCGCCAACAACAAACTAACCGGTCCAATTCCAAAGAGTATTGGAAACGCCTCCAATACCCTCACCGAAGTGCTTTTCTTGAACAACAGGTTTGAAGGGTGCTTGCCTTACGAAATTGGGTACCTAAAAAAGGCCACGGTGTTTGACGTGAGTGGAAACCTCTTAACCGGTCCAATCCCATACTCGTTCGCGTGCTTGGAGAAGATTCAGTTCCTGAATTTGGCGCACAACAAGTTCTACGGTGCTGTTCCGGAGAGTGTTTGTGTGCTTCCTGGGATACGCAACAATGGGAACCTATCTTTTTCCGACAACTATTTCAGTGAAGTTGGGCCAGCGTGCTGGAAACTGATAAAGTCTAAGGTGCTGGACGTGACCAATAACTGCATCCCAGGGCTCCCCAATCAAAGGTCACACAAGGAATGCTACGAGTTTCAATGCAAGGTGAAGCCGTGCCCAAATCAACAGTATCTGAAGTATGTCCCTTGTAAGGCGCACTGGCAGAAGCAGAGCACTGCCCCTGTTTCTCACGCTGCGGCTTCTTCACCCACTGAGCCTGTCACTTACAAGTCCCTCAAACCGCATCGGTTGAGATTGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01016	12482	13897	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001016s00027689.1	PF08263.7	LRRNT_2	101	135	2.30E-06
Glyur001016s00027689.1	PF00560.28	LRR_1	201	219	1.2

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	227.239
SRR1783600	control	237.998
SRR1783602	moderate drought stress	218.075
SRR1811619	moderate drought stress	216.330

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	90.683
DRR006520	Root Summer glycyrrhizin high producing strain	87.206
DRR006521	Root Winter glycyrrhizin high producing strain	6.910
DRR006522	Root Winter glycyrrhizin high producing strain	6.758
DRR006523	Root Summer glycyrrhizin low producing strain	83.959
DRR006524	Root Summer glycyrrhizin low producing strain	83.822
DRR006525	Leaf Summer glycyrrhizin high producing strain	654.289
DRR006526	Leaf Summer glycyrrhizin high producing strain	675.257

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	119.408
SRR2868004	Drought Stress (root)	103.574
SRR2967015	Control (root)	107.850

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	315.008
SRR9715740	Leaf	92.277
SRR9715741	Leaf	146.129
SRR9715739	Root	200.956
SRR9715742	Root	144.385
SRR9715743	Root	151.448

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.733
SRR8749028	MeJA induced 9h	1.076
SRR8749029	MeJA induced 9h	1.943
SRR8749030	Uninduced	0.180
SRR8749031	Uninduced	0.045
SRR8749032	Uninduced	0.223

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	103.959
SRR8400027	Control - Root	115.135