Gene detail

Gene detail information of Glyur001016s00027688

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G06744.1	6.00E-103	Leucine-rich repeat (LRR) family protein
NR	XP_007157716.1	0	hypothetical protein PHAVU_002G092300g [Phaseolus vulgaris]
COG	YP_004775215.1	2.00E-23	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|Q8W3M4\|Y4744_ARATH	3.00E-139	Uncharacterized protein At4g06744 (Precursor)
trEMBL	tr\|V7CKA8\|V7CKA8_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW29710.1}

Sequence

Transcript Sequence

>Glyur001016s00027688.1
ATGGTTTTATCTAAGCAATTAGCTCTAGTTTCAACGTTGCTCACTACCTTCCTTCTTTCCCCCCTGTTCGTAGATTCCCAGATCCTTGAAAATTCACCCCCATTAGTCCCTGGCATTATAAGCTTCATAGACCAGAGGCTCGCACTAGTGTTCCCAATAATCCAAGCCTTCAAGAGCACAATCACTTCAGACCCGTTAGGAATAACCGCAACCTGGGTTGGTCCAAACATATGCAACTACAAAGGCTTCTTCTGCGATAACCCACCGGATAATTTCACCGCCACCACCGTTGCCTCCATAGACTTCAACGGCTTTCAGATCGCCGCCCCCACCCTAGACGGTTTCATCGATCAACTCCCTGACTTGGCTCTTTTCCACGCTAACACCAACAAATTTTCTGGCACCATTTCGCCCAAAATAGCAGGACTCAAGTATCTCTACGAACTCGATCTGAGTAACAACCTTCTCTCTGGGACATTACCAATTTCGGTCCTAAACATTCCCACCCTGTCCTTTTTCGACATCAGGTACAACTTCTTCGCCGGTACCGTGCCGCCACAAATTTTCATACAACGCTTGGATGCGCTTTTCCTCAACAACAACAATTTCGCACTCACCCTACCCAACAATTTAGGGGACACGTCAGCGGCTTATCTNACTTTAGCCAACAACAAATTCACCGGCCCCATTCCCCGTAGTATTGGGAAGGCCTCGTCCACGTTGGTCGAAGTGTTACTCCTGAACAACCTTTTAACCGGTTGTCTTCCCTACGAAATAGGACTCCTAGGAAATGTTAAGTTGTTTGATGCCGGCGGTAACCTCTTGACGGGGCCGTTACCGTTATCGTTTGGGTGTTTGAAGAAGGTGGAGCAGCTCAACCTGGCAAGGAACATGTTGTACGGACAGGTTCCTGAAGTGGTTTGTAAGTTGGAGAATTTGGCAAATTTGTCCTTGTCTTATAACTACTTCACGAGAGTGGGGCCCTTTTGCAAGGAGCTGATCACAAGGGGTGTTCTTGATGTGAGGAAGAACTGTATTTTTGGTCTTCCTGATCAGAGATCGATGAAGGAGTGTGTGGCGTTCTCCTTGCTTCCAAAAACTTGTTTGCGCTCTGCGTCGTATAATATCATACCGTGTGAGATTCCAAAACGGACCAAACCTCTGCCGAGAAGCGAGAGTAAGAGGCATTTGCTGTCATATTCTGCTCTTTCGAGAAACAGAATTGCGAAGTTGGCCAGTGGAAGTTCTCTTCCCCGTGGCTGGGCTTGGAATCTCCCAGATTCCATTAAGGTGGTACTAGCGGTGGATAAAAATTTAGCTCAGGGTGTGGGGCGAGGCAGACATGAGGCTTCTGCGATGAGGGACCTCCCTCGTGTTCGATTGGCTACAGGGATTAGGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01016	7799	9535	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--	--

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.052
SRR1783600	control	6.088
SRR1783602	moderate drought stress	3.088
SRR1811619	moderate drought stress	3.069

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.189
DRR006520	Root Summer glycyrrhizin high producing strain	6.869
DRR006521	Root Winter glycyrrhizin high producing strain	0.303
DRR006522	Root Winter glycyrrhizin high producing strain	0.310
DRR006523	Root Summer glycyrrhizin low producing strain	16.313
DRR006524	Root Summer glycyrrhizin low producing strain	16.365
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.828
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.560

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.344
SRR2868004	Drought Stress (root)	11.817
SRR2967015	Control (root)	4.385

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.024
SRR9715740	Leaf	1.251
SRR9715741	Leaf	2.112
SRR9715739	Root	4.114
SRR9715742	Root	6.063
SRR9715743	Root	4.290

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.834
SRR8749028	MeJA induced 9h	1.910
SRR8749029	MeJA induced 9h	1.538
SRR8749030	Uninduced	0.169
SRR8749031	Uninduced	0.004
SRR8749032	Uninduced	0.039

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.339
SRR8400027	Control - Root	2.087