Gene detail information of Glyur001016s00027686 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G67210.1 | 3.00E-68 | Protein of unknown function (DUF579) |
| NR | KEH30898.1 | 3.10E-156 | polysaccharide biosynthesis protein [Medicago truncatula] |
| COG | YP_005070644.1 | 2.00E-33 | TPR domain protein [Arthrospira platensis NIES-39] |
| Swissprot | tr|Q9FH92|IX15L_ARATH | 1.00E-101 | Protein IRX15-LIKE |
| trEMBL | tr|A0A072UPH3|A0A072UPH3_MEDTR | 1.00E-156 | Polysaccharide biosynthesis protein {ECO:0000313|EMBL:KEH30898.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01016 | 2380 | 3336 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001016s00027686.1 | PF04669.8 | Polysacc_synt_4 | 98 | 283 | 7.40E-67 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.826 |
| SRR1783600 | control | 10.938 |
| SRR1783602 | moderate drought stress | 15.357 |
| SRR1811619 | moderate drought stress | 15.912 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.969 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.422 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.830 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.741 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.791 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.292 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.613 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.419 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.370 |
| SRR2868004 | Drought Stress (root) | 8.555 |
| SRR2967015 | Control (root) | 7.625 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.319 |
| SRR9715740 | Leaf | 2.353 |
| SRR9715741 | Leaf | 2.564 |
| SRR9715739 | Root | 5.115 |
| SRR9715742 | Root | 3.521 |
| SRR9715743 | Root | 3.046 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.936 |
| SRR8749028 | MeJA induced 9h | 0.539 |
| SRR8749029 | MeJA induced 9h | 1.031 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.059 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 11.190 |
| SRR8400027 | Control - Root | 7.884 |