Gene detail information of Glyur001015s00035867 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G12910.1 | 2.00E-37 | serine carboxypeptidase-like 20 |
| NR | CAN64572.1 | 1.07E-71 | hypothetical protein VITISV_010382 [Vitis vinifera] |
| Swissprot | tr|Q8L7B2|SCP20_ARATH | 5.00E-43 | Serine carboxypeptidase-like 20 (Precursor) |
| trEMBL | tr|A5AIJ0|A5AIJ0_VITVI | 4.00E-72 | Carboxypeptidase {ECO:0000256|RuleBase:RU361156} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01015 | 46720 | 49015 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001015s00035867.1 | PF00450.17 | Peptidase_S10 | 8 | 63 | 9.00E-11 |
| Glyur001015s00035867.1 | PF00450.17 | Peptidase_S10 | 121 | 195 | 7.40E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.880 |
| SRR1783600 | control | 2.312 |
| SRR1783602 | moderate drought stress | 3.315 |
| SRR1811619 | moderate drought stress | 3.563 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.650 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.490 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.759 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.376 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.853 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.629 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.909 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.970 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.359 |
| SRR2868004 | Drought Stress (root) | 0.059 |
| SRR2967015 | Control (root) | 0.032 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.907 |
| SRR9715740 | Leaf | 1.479 |
| SRR9715741 | Leaf | 1.302 |
| SRR9715739 | Root | 1.094 |
| SRR9715742 | Root | 0.686 |
| SRR9715743 | Root | 0.277 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.208 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.058 |
| SRR8749030 | Uninduced | 0.061 |
| SRR8749031 | Uninduced | 0.224 |
| SRR8749032 | Uninduced | 0.319 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.850 |
| SRR8400027 | Control - Root | 7.621 |