Gene detail

Gene detail information of Glyur001012s00035852

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G02870.3	1.00E-155	Galactose oxidase/kelch repeat superfamily protein
NR	XP_007157663.1	0	hypothetical protein PHAVU_002G088200g [Phaseolus vulgaris]
COG	YP_003393273.1	6.00E-10	Kelch repeat-containing protein [Conexibacter woesei DSM 14684]
Swissprot	tr\|Q8L736\|SKI11_ARATH	0	F-box/kelch-repeat protein SKIP11
trEMBL	tr\|V7CK00\|V7CK00_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW29658.1}

Sequence

Transcript Sequence

>Glyur001012s00035852.1
ATGTTGGACGGTCGTTCCTGTGTTGTTCCGAGGTTGTTTTGCAGCTCTTGCCAGGCAGAGAACGACTGGTCTTACATGAAGTACCTGCTGGACTTGGACATCAAAAATGGCAAGCGCCCTATGGAGATTGATGATGATGCTGAGGATGAGCCCAAACCAAGGAAGTGTACCAAGATATTCGATTCCTTCCACATGGTCGAAACGGTTCAAATCTCATTCCAACAGCAATCCTTGCAGGCTGAGGATTCTGTTGTTGTTCCTCAAATGGATCAGCAGACCATTGAGCCATTGAGTATTTGTCAAGGAGGCCAAGAAGAAGCTGGAGCTTGCAATGATGTCCAGCTATTGGCTGAACAAGAAAAGCAGCTTGGTGGTGATTCAATGGAATGTGGTGATAAGCAGCAGCATGGTGATTCATCAGATTCCNGTATTCAGCCGTCTGATGAACCGCAGCTGCAACATGCTGAGAGTTCATTGAGTCCAAGTGAACAGCAATCTGATGAGCAGCAACAGCAACAACAACATGCTGGGAACTCATCATCAGATTCTGGCTCTCTTTTGCCACGCATGAACCGGGACAGCTCAATTGCCTGTCTCAGCCGCTGTTCGAGGTCTGACTATGGTTCCCTTGCCTCGCTGAACCGGAGCTTCCGTAACATAATCCGAAGCGGCGAGCTCTATACATGGAGGAGGCTGAATGGCATCATGGAGCACTGGGTTTATTTCTCCTGTGCCCTCCTTGAATGGGAAGCCTACGATCCAATCCGCCAAAGGTGGATGCATTTACCAAGGATGGCTTCTAATGAATGCTTCATGTGTTCGGATAAGGAATCTTTAGCNGTAGGAACCGAACTCCTTGTGTTTGGGAGGGAGCTGAGGTCCCATGTCATTTACAGATACAGTCTTTTGACAAACTCATGGTCCTCAGGAATGAGAATGAATGCTCCAAGGTGCTTGTTTGGCTCGGCTAGCCTCGGGGAGATTGCGATATTAGCCGGTGGATGTGATTCAGAGGGACGTATCCTTGACTCTGCTGAACTATATAATTCCGAGACTCAGACATTTGAAATGCTGCCAAGAATGAAGAAACCAAGGAAGATGTGTTCTGGGGTGTTCATGGATGGGAAGTTTTATGTTATAGGGGGAATTGGGGGAAGTGATTCCAAGCTTCTTATGTGTGGAGAGGAGTACAATTTGCAGACTAGAACATGGACAGAAATTCCTAACATGTCCCCCGGGCGAAGTACTAGGGGGTCTGAGATGCCTGCAACGGCCGAGGCACCACCTCTGGTTGCTGTTGTAGATAATGAACTGTATGCTGCTGATTATGCTGACATGGAGGTTAAGAAGTATGACAAGGAGAGGAAAGCATGGTTCACCATTGGGAGACTACCGGAACGAGCAGTGTCGATGAATGGTTGGGGTCTTGCATTCAGGGCATGTGGAAACAGGCTTATTGTCATTGGTGGACCTAGGACTCATGGGGAGGGTTTCATTGAACTCAATTCATGGGTGCCTAGTGAGGGACCTCCACAATGGCGGCTACTCGCTAGAAAACGATCCGGTAACTTTGTCTATAATTGTGCTGTGATGGGATGCTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01012	82077	83678	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001012s00035852.1	PF01344.20	Kelch_1	316	361	5.70E-07
Glyur001012s00035852.1	PF01344.20	Kelch_1	364	411	4.70E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.616
SRR1783600	control	2.586
SRR1783602	moderate drought stress	3.163
SRR1811619	moderate drought stress	3.216

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.544
DRR006520	Root Summer glycyrrhizin high producing strain	7.938
DRR006521	Root Winter glycyrrhizin high producing strain	14.374
DRR006522	Root Winter glycyrrhizin high producing strain	13.677
DRR006523	Root Summer glycyrrhizin low producing strain	16.437
DRR006524	Root Summer glycyrrhizin low producing strain	15.961
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.889
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.700

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	17.406
SRR2868004	Drought Stress (root)	27.010
SRR2967015	Control (root)	20.720

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	29.363
SRR9715740	Leaf	20.910
SRR9715741	Leaf	47.028
SRR9715739	Root	8.278
SRR9715742	Root	19.033
SRR9715743	Root	16.805

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	80.782
SRR8749028	MeJA induced 9h	97.074
SRR8749029	MeJA induced 9h	93.147
SRR8749030	Uninduced	47.762
SRR8749031	Uninduced	104.151
SRR8749032	Uninduced	66.777

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.054
SRR8400027	Control - Root	16.862