Gene detail

Gene detail information of Glyur001011s00030369.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G24760.1	4.00E-89	Galactose oxidase/kelch repeat superfamily protein
NR	XP_003530882.1	0	PREDICTED: F-box/kelch-repeat protein At3g24760-like [Glycine max]
COG	NP_869242.1	1.00E-07	hypothetical protein RB10103 [Rhodopirellula baltica SH 1]
Swissprot	tr\|Q3EB08\|FBK69_ARATH	1.00E-128	F-box/kelch-repeat protein At3g24760
trEMBL	tr\|I1KZB7\|I1KZB7_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G47090.1}

Sequence

Transcript Sequence

>Glyur001011s00030369.1
ATGACTACAGAGATAACAAATCTGAGCACAGACCTAATAGAGCTAATTCTCTCCCTCCTCCCAATCCCAACTCTAATCCGAGCCTCCACCGTTTGCAAGCTATGGCACTCCATAATCTCCTCCATTTCCTTCTCCAACCACCACAGCCACAACCACAAACCATGGTTCTTCCTCCACGGCATCCACAACCTCTCCTCAAAGAACAACCAATCCTTCGCNTTCGACCCTTCCTCCAACACCTGGCTCCTTCTCCCTACACCACAACAACACCCCAACACCAACAACACCAACAGCACCAACACTTCCTTCATAGGAACCTCTTCCTTCTTCTTCCTAACCGCACCTAACTTCCTCTACGCTCCAATTCTCCNCCCTCGCTGGCACCGAACTCCTCCCCTTCACTTCCCTCGCATCAACCCCCTCCTCGCCGTCTTCCACGACAACAACCCTTCCCGTTCCCTCAAGTTCATCGTTGTCGGTGGCGTACGGTTCATCGGAAACCTCGTAGACATCGAGGACCGTTTGGATGTCGAAATCTACGACCCGCTTTTGAATTCATGGGAACTCGCTCCTCCTCTCCCTGCAGATTTCAGATCCGGAAACTCCTCTTCCTCCCTCTCCTCTGCTCTATTCAAAGGAAGATTCTATGTTTTCAGAATCTACTCATGCTTCGTTTCTTCCTTTGATTTGAACCAACGTGTTTGGAGTGAGGTCAAAACCCTAAGGCCTCCTGGGGTTGTTTTTTCCTTCTTGATTGCGTGTAGGGATAGCCTTATCCTTGCTGGGGTATGCAACTNCAATTCCAATAATTTGCCACGTGGCTCTTCTTCTTCTTGTTTTACCCTTTGGAGGGTTGAAGAGGTTACCATGGGGTTTACTGAGATTTCTGTGATGCCGCATGATTTGCTATGTGGACTATTTGATGGTGATGAGGAGGATAAGTTTGCTAGCTTGAAGTGTGTTGGGTTGGGTGATCTTATCTATGTCTTCAATGAGGATTACCATAGGATGTACCCTGCTTGTGTTTGTGAGATTCGGAGTGGTGGTGAGTGTTGTTGGAGGAGGGTGCCCCAATTGCCTTCCCTTATGAACAGGTTTCACAAAGTTATTAGCTTTTGTTCAACTGTTTCACTGCCTAGTGTACTCGGTCAGCATCAACAACATGGGCAATTTGGTATCCACTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01011	62716	63900	-

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001011s00030369.1	PF00646.28	F-box	5	45	5.50E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	27.902
SRR1783600	control	28.367
SRR1783602	moderate drought stress	36.216
SRR1811619	moderate drought stress	37.003

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	16.316
DRR006520	Root Summer glycyrrhizin high producing strain	16.991
DRR006521	Root Winter glycyrrhizin high producing strain	14.181
DRR006522	Root Winter glycyrrhizin high producing strain	14.749
DRR006523	Root Summer glycyrrhizin low producing strain	17.104
DRR006524	Root Summer glycyrrhizin low producing strain	16.913
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.168
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.994

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	22.706
SRR2868004	Drought Stress (root)	35.356
SRR2967015	Control (root)	29.977

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.315
SRR9715740	Leaf	12.543
SRR9715741	Leaf	12.326
SRR9715739	Root	11.690
SRR9715742	Root	16.178
SRR9715743	Root	15.206

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.328
SRR8749028	MeJA induced 9h	6.553
SRR8749029	MeJA induced 9h	3.808
SRR8749030	Uninduced	4.546
SRR8749031	Uninduced	1.878
SRR8749032	Uninduced	3.043

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	21.038
SRR8400027	Control - Root	22.789