Gene detail

Gene detail information of Glyur001011s00030367

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G07030.1	1.00E-59	Alba DNA/RNA-binding protein
NR	XP_007140567.1	1.50E-96	hypothetical protein PHAVU_008G123500g [Phaseolus vulgaris]
trEMBL	tr\|V7B7V9\|V7B7V9_PHAVU	6.00E-97	Uncharacterized protein {ECO:0000313\|EMBL:ESW12561.1}

Sequence

Transcript Sequence

>Glyur001011s00030367.1
GGCAGTGCAACGAGAGAGAGAGTCGCGTTAGCGTTATACCCTCCAAACCCAAAGGCATAACATACGGACCCTGAGGTTTTAGAAACACTTTACCCTTTCAGTCTCTATTCTCTTCTATCCCTCACTCTTCTAGGGTTTTAAGTTTAGGGTTTCGTTCACCCCTTTTCTCTCTCTCTATCTCTCTTCCCAAGCAGCCATGGATAGGTACCAGAAGGTCGAAAAGCCAAAACCCGAGTCTCCTATCAACGAAAATGAGATCCGAATCACCACCCAAGGTGCCATTCGCAACTACATCACCTACGCCACTTCCCTTCTCCAGGAAAAGCATGCAAGAGAGATTGTCTTGAAGGCAATGGGACAAGCAATCAGCAAGCCAGTTGCCATTGCAGAGATTTTGAAGAAGAGGATTGCCCGGCTACATCAAGATACTGCCATCAGCTCAGTTAGCATAACAGATGTGTGGGAACCCATTGAAGAGGGTCTTGTACCTGTGGAAATGACTCGGCATGTCTCTATGATCTCAATCACCTTGTCAACTAGAGAATTAAACAAAAACTCTCCTGGGTATCAAGCTCCATATAATAATGTGGAACAACCTAAGCCACACTCCAATTATCAGCAGCAACCTATAAAACCAGCACGGGGTCCTTATAATGCTACTCATATGGCCGAGGTCGAGGTCGTGGTCGGGGGAGAGGGAGAGGAAGGAATTGGGGAAGGGGTGGTTATGGCTATCAAGGTGGTTATGGAAATTATCAAGGTGGATATGGATATTACCAGGGTGGATATGCAAATTATCAAGATAATGGTGGGTATTCAAATCGAGGCCGAGGTGGTGGGCGAGGCAGAGGTTGGGGGTATCGTGGTACTGGTTATGATGGTGGCAGAGGTGGCGGAGGTTATGAAGGTGGCAGAGGTGGAGGAGGTTATGAAGGAGGCAGAGGTGGAGGTTATGAAGGAGGCAGAGGTGGCTATGAAGGTGGCAGAGGTGGAGGTTATGAAGGTGGTAGAGGTGGAGGAGGTTATGAAAGAGGCAGAGGTGGAGGCAGGGGATATGGCCGTGGTAGGGGACGAATGGGTGGACGTGGTAGGGGTGGAGGCATCCAGGCATGATAGCAATGGATGTTAATCTCATTCTTGCTAAGTGCTTGCTTGACAGTGCGGTTAATGTTATTAGAATACTCTGTTGATAGTGTGATGTGGCTCATNATCCAGCATTTATGTTTTTTCGTCATGAAATTGATATGGGCAAGGTTTTGTTTATCTTTAGATTTAGCCGGTAAGCATCTTGGTTTTATGATTGCTGTAATTCATTTCAACTTTTATGGTTGCCAATACCATATTTTTATCTGTATCTGGTTTCTATATGGTTTTCATTTTTAATCAAAGTAGCCTTTTTTTTAGCTGATGACCTTGCACACTATTCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01011	48465	53422	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0003676 nucleic acid binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001011s00030367.1	PF01918.16	Alba	19	79	3.20E-14
Glyur001011s00030367.2	PF01918.16	Alba	19	79	4.30E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	39.635
SRR1783600	control	39.712
SRR1783602	moderate drought stress	46.503
SRR1811619	moderate drought stress	46.532

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	48.393
DRR006520	Root Summer glycyrrhizin high producing strain	47.846
DRR006521	Root Winter glycyrrhizin high producing strain	25.123
DRR006522	Root Winter glycyrrhizin high producing strain	24.809
DRR006523	Root Summer glycyrrhizin low producing strain	53.544
DRR006524	Root Summer glycyrrhizin low producing strain	53.314
DRR006525	Leaf Summer glycyrrhizin high producing strain	24.613
DRR006526	Leaf Summer glycyrrhizin high producing strain	23.976

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	67.667
SRR2868004	Drought Stress (root)	51.747
SRR2967015	Control (root)	61.012

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	20.636
SRR9715740	Leaf	24.325
SRR9715741	Leaf	19.113
SRR9715739	Root	24.391
SRR9715742	Root	33.413
SRR9715743	Root	28.884

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	34.286
SRR8749028	MeJA induced 9h	17.284
SRR8749029	MeJA induced 9h	22.679
SRR8749030	Uninduced	5.720
SRR8749031	Uninduced	4.940
SRR8749032	Uninduced	4.887

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	62.425
SRR8400027	Control - Root	68.465