Gene detail

Gene detail information of Glyur001011s00030361.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G48840.1	4.00E-107	homolog of bacterial PANC
NR	XP_004492324.1	3.53E-180	PREDICTED: pantoate--beta-alanine ligase-like [Cicer arietinum]
COG	YP_003496076.1	1.00E-78	pantoate--beta-alanine ligase [Deferribacter desulfuricans SSM1]
Swissprot	tr\|O24035\|PANC_LOTJA	0	Pantoate--beta-alanine ligase (Precursor)
trEMBL	tr\|K7MSX3\|K7MSX3_SOYBN	7.00E-173	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA18G38038.1}

Sequence

Transcript Sequence

>Glyur001011s00030361.1
CCCACCGAAACACGTTTCATTCCCCAACAAACAACATCGATCCCCCCATTGTTCCTTCTGAGTACTATCACTTTACAGCTACACAGTACGCAAAACAAATTCACCCGTTTTCACAAGTTCCTTTCTTCATTGTTTCATTCCAACTCTTCCCAATGGAACAAAAAGTGCCGCTTGTGATCACGGAAAAGGANCGTATGAGGGAATGGTCAAGGTGGATGAGATCACAAGGCAACATCATAGCCCTCGTCCCCACAATGGGTTACCTCCACGAGGGACACCTCTCTCTGGTTAGAGAAGCCCGCAAACACGCCAACGTTGTAGCCGTCTCCATCTACGTCAACCCTGGCCAGTTCTCACCAACCGAGGACCTTTCCACCTACCCTTCTGACTTCCAAGGTGATATCCAAAAGCTCAAGTCTCTTCCTTGTGGCGTCGACGTTGTTTTCCACCCCAAAAATCTCTATGATTATGGTGGTGATCACAGTGAGGGTGTGGTTGTTGAGGGTGGTGGTGATGGGGTTGCTGTGTCTTCTTCTTCTTCTTCTTCTTGTGTTGAGATTGAGAGGAGGAGGAGTAGTGGGTTGGGGCATGAGACATGGGTGAGAGTTGAGAAGCTGGAGAAGGGTCTTTGTGGGTTGAGTAGGCCTGTTTTCTTTAGAGGGGTTGCTACCATTGTCACCAAGCTGTTCAATATAGTGGAGCCTGATGTTGCTGTCTTTGGGAAGAAGGATTATCAGCAGTGGCGACTTATTCAGAGAATGGTTCGAGATCTTGATTTTTCCATAAAAGTGATAGGTTCTGAAATAACACGGGACAGTGATGGCCTGGCAATGAGTTCGCGTAATGTACACCTTTCACCTGAAGAGAGGGAAAAGGCACTATCTATAAATAAATCATTGTTTAGAGCCAAGTCAGCAGCAGAAGATGGTCAGGTGCATTGTGGGGAATTAAGAAACTNGGTCATCCAATGTATTACTGAAGCTGGTGGAAGGATTGATTATGCTGAGATTGTTGATCAAAAGAGTTTGGAGAAAGTGGAATTTATCAAGGGTCCTGTTGTCTTCTGTGTTGCTGCATTGTTTGGGAAAGTCAGGCTTATAGACAACATGGAAATCAACTTGTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01011	8135	11859	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01918	panC	EC:6.3.2.1	beta-Alanine metabolism	map00410
			Pantothenate and CoA biosynthesis	map00770

Gene Ontology

biological_process
GO:0015940 pantothenate biosynthetic process

molecular_function
GO:0004592 pantoate-beta-alanine ligase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001011s00030361.1	PF02569.10	Pantoate_ligase	8	114	1.60E-31
Glyur001011s00030361.1	PF02569.10	Pantoate_ligase	146	321	1.60E-55

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.511
SRR1783600	control	1.509
SRR1783602	moderate drought stress	2.318
SRR1811619	moderate drought stress	2.254

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.680
DRR006520	Root Summer glycyrrhizin high producing strain	6.014
DRR006521	Root Winter glycyrrhizin high producing strain	8.094
DRR006522	Root Winter glycyrrhizin high producing strain	7.643
DRR006523	Root Summer glycyrrhizin low producing strain	11.350
DRR006524	Root Summer glycyrrhizin low producing strain	11.544
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.577
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.653

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.365
SRR2868004	Drought Stress (root)	9.214
SRR2967015	Control (root)	6.772

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.358
SRR9715740	Leaf	1.051
SRR9715741	Leaf	3.603
SRR9715739	Root	4.036
SRR9715742	Root	9.885
SRR9715743	Root	7.220

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.858
SRR8749028	MeJA induced 9h	5.227
SRR8749029	MeJA induced 9h	6.889
SRR8749030	Uninduced	11.150
SRR8749031	Uninduced	13.904
SRR8749032	Uninduced	8.802

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.393
SRR8400027	Control - Root	7.463