Gene detail

Gene detail information of Glyur001011s00030359

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G32670.1	2.00E-101	vesicle-associated membrane protein 725
NR	XP_009588661.1	2.26E-143	PREDICTED: vesicle-associated membrane protein 721 [Nicotiana tomentosiformis]
Swissprot	tr\|Q9MAS5\|VA726_ARATH	2.00E-132	Putative vesicle-associated membrane protein 726
trEMBL	tr\|M1BSH7\|M1BSH7_SOLTU	2.00E-141	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400051941}

Sequence

Transcript Sequence

>Glyur001011s00030359.1
CCGTTTCACGCTTCTTCGCATCCANGCCAGGAAAATTAAAAAACAGACACTTCTCCTTCCATTTGAACGCTCTCTGTNCTGTTTACTACTACAAAACAGAAGAACGAAGCCTCCTTGTTCTTCTTTCTCACTCTCTTTCTCTCTCTAGAACCGGAGCCATTTGCTCCTTTCTCTCTCTACAACCGACACTGCCATTTCCTGAATCGATCTCGCGGCGTTGTTTTGTTTTGTTCTGCGGTTGTGGTTCCGGCGATGGGACAGCAATCGTTGATCTACAGCTTCGTGGCTCGCGGCACCGTGATCCTCGCCGAGTACACCGAGTTCACCGGAAACTTCACCGGTGTGGCAGCGCAGTGCCTCCAGAAACTCCCTTCCTCCAACAACAANTTCACCTACAACTGCGATGGCCANACCTTCAACTACCTCGTCGATAATGGATTCACTTACTGTGTTGTTGCGGTTGAGTCTGCTGGACGGCAAATTCCAATTGCTTTCCTTGAACGTATCAAGGAAGATTTTACCAAGAAGTATGCTGGAGGAAAAGCTGTTTCTGCAGCTTCTCAGAGTCTGAACAGAGAGTTTGGACCTAAGTTNAANGAGCAGATGCAGTACTGTGTGGATCACCCGGAGGAGATTAGCAAGCTTGCTAAAGTGAAAGCTCAGGTTTCGGAAGTCAAAGGGGTTATGATGGAAAATATTGAGAAGGTTCTGGACCGTGGAGAGAAAATTGAGCTTTTGGTGGATAAGACAGAGAACCTTCGCTCTCAGGCGCAAGATTTCAGGCAACAGGGTACCAAGATTAGGAGAAAGATGTGGTTCCAAAATATGAAGATAAAGCTAATAGTTCTGGGTATCATAATCGCCTTGATTCTCATTATTGTTCTTTCAGTCTGTGGTGGCTTGAAGTGTACTAAATGAGTATGTATTTCCATTGGTGGCTTGGCTTCAAATGTGGTAAATTGTCTCCCCACTCGATAAGATCGTCGCTAGTGGATTGCCATTGCCTCTACTGTCGACGTAGTGCTTTTGACTTAATTTTTGGGATTTGCATNCTTCCTACATCTACGATGATCAATATTGAATGACATTGCTTGTATAGTGCGATAGATATGATTTTGTCTTCACCAACTTGTTTACCACAGTGAAATGCTAATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01011	2598	5518	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006810 transport

GO:0016192 vesicle-mediated transport

cellular_component
GO:0016021 integral component of membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001011s00030359.1	PF13774.1	Longin	31	111	3.40E-21
Glyur001011s00030359.1	PF00957.16	Synaptobrevin	129	215	1.40E-34

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	24.441
SRR1783600	control	24.373
SRR1783602	moderate drought stress	14.903
SRR1811619	moderate drought stress	14.789

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	19.006
DRR006520	Root Summer glycyrrhizin high producing strain	19.508
DRR006521	Root Winter glycyrrhizin high producing strain	2.116
DRR006522	Root Winter glycyrrhizin high producing strain	2.052
DRR006523	Root Summer glycyrrhizin low producing strain	17.354
DRR006524	Root Summer glycyrrhizin low producing strain	16.741
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.588
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.740

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	42.496
SRR2868004	Drought Stress (root)	25.811
SRR2967015	Control (root)	22.649

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	11.610
SRR9715740	Leaf	5.290
SRR9715741	Leaf	9.879
SRR9715739	Root	18.495
SRR9715742	Root	17.763
SRR9715743	Root	15.846

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	43.409
SRR8749028	MeJA induced 9h	22.806
SRR8749029	MeJA induced 9h	25.273
SRR8749030	Uninduced	9.411
SRR8749031	Uninduced	7.169
SRR8749032	Uninduced	7.689

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	30.811
SRR8400027	Control - Root	34.059