Gene detail

Gene detail information of Glyur001009s00021083.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G22860.1	2.00E-151	Serine carboxypeptidase S28 family protein
NR	CBI17109.3	0	unnamed protein product [Vitis vinifera]
Swissprot	tr\|Q1PF50\|EDA2_ARATH	3.00E-22	Probable serine protease EDA2 (Precursor)
trEMBL	tr\|F6GW68\|F6GW68_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB44203.1}

Sequence

Transcript Sequence

>Glyur001009s00021083.1
CTTTGATTCATATTTGAATTGAAATAGAAAGAGAACCTCAAAGCTATTATTCTCTCTTGTTGCAATGAAACACTACCCTTTGTTCAAATGGCTTCTTTTCATCTTTCTCATATACTCAACCTATCTCACCACATCAATAACACACTCGTTGACGATTCCAAGGTTGAGCCCATTTGCTGAATGGGAAACAACCTTACACGACCCTGCATCCATGGTTAATGCAACTGATACAGAGGATTTCAAAACATTTTATTTCAAACAGGTTTTGGATCACTTCAACTATAGGCCTGAAAGCTACCAAGAATTTCAACAAAGATATATGATCAATTTCAACTACTGGGGTGGTGCTAATTCTAGTGCCCCAATACTTGCCTACTTGGGTGCAGAAGAACCATTAGATAATTCCCCTAAGGGCGTAGGATTTATGACTGATAATGCAGCTTCCTTAAAAGCTCTCCTAGTATACATAGAGCACCGGTACTATGGGAAATCAGTGCCATTTGGATCCAGGGAAGAAGCAATGAAGAATGCAAGCACTCTTGGGTATTTCAACTCAGCTCAAGCCATTGCAGATTATGCAGCAGTACTCATACATATAAAGAAGACATTACACGCCCAAAAGTCCCCAGTGATTGTGATTGGAGGATCATATGGTGGAATGCTAGCTTCATGGTTTAGGCTCAAATATCCTCACGTCGCCATTGGTGCCCTGGCCTCATCAGCACCAATCCTCTACTTTGATAACATCACACCACAAAATGCTTACTTCTCTGTTGTTTCAAGGGATTTCCGAGAAGCCAGTGAGACATGCTACCAAACTATACTGAATTCTTGGTCTGAAATCGACAGAGTAGCTTCTCAGCCAAATGGTCTTTCCATTCTTAGCCAGAGATTCGACGCTTGCAATCCCTTGAACCAATCATATGAGTTGATAGACTACCTGGAGTCCATGTATACTTCTGCGGCTCAATACAATCACCCACCAAGGTATCCAGTCACTGTGATTTGTGGGGGCATTGATGGAGCTTCTTTTGGAAGTGATATCCTCAGTAAGATATATGCAGGTGNTGTGGCGTATAGGGGAAACACCACATGCAAAGTTAATGCCCCTACTAATGTAACTGAGACAGAAGAGGGTTGGAGATGGCAGAATATAAAATTGGTTCTTCAAAAGTTTGGGAGCAACATCATTTTCTCGAATGGACTAAGAGACCCTTATAGTAGTGGCGGGGTTCTGGACAACCTATCAGACAGTCTTGTTGCCGTCCATACTGTCAATGGATCTCATTGCCTGGATATTAGGCATGCATATCAAAGCGATCCGGAATGGTTGGTCGAACAACGGAAGAAAGAGGTCGAGATTATCCAAGGGTGGATCACCCAGTTAGGAACTTTTCCGCGAAGAACAAAGGAACGCGAACCCCAAACCACCATGTCATCTTCCACCTTTCCTGAAGAAGACCTCAAAACATTCTATTACACCCAAAGACTTGATCACTTCAACTACAGGCCTGATAGCTACACCACTTTCCAACAAAGATACATGGTGAATTTCAAGTACTGGGGTGGATCCAAATCAAATGCACCAATTTTTGCATTCCTTGGTGCAGAAGAACCCGTGGATGAGGATATCTACTATGTTGGGTTTCTCAGAGATAACGCTCCTCACTTCAATGCTCTTATTGTTTATATTGAGCATAGATACTATGGGAAATCAATNCCATTTGGGTCGAGGGAAGAAGCTATGAGAAATGCGAGTACTCGCGGCTACTTCAATTCAGCCCAAGCAATAGCAGACTATGCTGCTGTGCTTCTACACATCAAGAAAAGTTTGTCTGCTCAGAATTCTCCCATAATCGTCATTGGAGGCTCTTATGGTGGAATGCTTGCATCATGGTTCCGCCTAAAGTATCCCCATATTGCTCTTGGTGCTCTTGCTTCATCAGCACCCATTCTTTACTTCAATGGCGTTGCTCCTCGAGCCGGATACTATTACATCGTAACCAAGGACTTCAAAGAAACTAGTGAGAGCTGTTACCAAGCTATACGTAAATCATGGTCTGAAATCGACAGAGTTGCTAAGAAGCCTAATGACTCATTATACACTGAGGCGGCTCAGTATAANCACCCTCCTGTGTACCCAGTTAAGCTCATTTGTGAAGCTATTGATTCTGCAGCTAAGAAAACCGATGTTCTTGGCCAAATTTTTGAAGGGGTCGTTGCTTATATGCGGCACCGCTCATGCTATGACATGAATGAATACAATCATCCAACTGAAACATACTCCGGATGGAGATGGCAGACATGCAGCGAGATGGTTATGCCAATAGGTCACGATCATTGGAATGACTCAATGTTCCCACCAGCACCCTTCAATATGAAGAAATTTGTCAATGAGTGTAGGAGCTTATATGGTGTCCTCCCGCAGCCTCATTGGGTGACCACATATTACGGGGGCCCTGATTTGAAACTGATTCTCCATAGGTTTGCGAGCAACATCATCTTCTCCAATGGATTGAAAGATCCGTATAGCTCTGGCGGGGTGTTGGAGAGTATATCAAATAGTGTCATTGCTGTTTCCACTGTAAATGGGTCACATTGCTTGGACATACTCTCAGAAAAATCAAGTGATCCAAAGTGGTTGGTCATGCAGAGAAATACAGAGATCAACATAATCAAAGGCTGGATCGCAGAGTACAAAGCGGATTTAGTGGCACTAAATAAACCAATCCAAGCACCATGAAACCGGAAAGGAATGTTAAATTGCTCCACGACCTACATAATGAAGTGTTTAATTAATTAGTGTTCCATTACAAGTAGTAATCAACATTATGCTGCTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01009	49887	62781	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01285	PRCP	EC:3.4.16.2	Renin-angiotensin system	map04614
			Renin-angiotensin system	map04614
			Protein digestion and absorption	map04974
			Protein digestion and absorption	map04974

Gene Ontology

biological_process
GO:0006508 proteolysis

molecular_function
GO:0008236 serine-type peptidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001009s00021083.1	PF05577.7	Peptidase_S28	66	345	4.70E-53
Glyur001009s00021083.1	PF05577.7	Peptidase_S28	372	429	3.70E-08
Glyur001009s00021083.1	PF05577.7	Peptidase_S28	474	676	3.40E-49
Glyur001009s00021083.1	PF05577.7	Peptidase_S28	717	865	9.40E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.635
SRR1783600	control	0.643
SRR1783602	moderate drought stress	0.089
SRR1811619	moderate drought stress	0.127

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.210
DRR006520	Root Summer glycyrrhizin high producing strain	2.181
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	1.671
DRR006524	Root Summer glycyrrhizin low producing strain	1.773
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.643
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.470

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.341
SRR2868004	Drought Stress (root)	10.983
SRR2967015	Control (root)	11.976

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	13.627
SRR9715740	Leaf	11.390
SRR9715741	Leaf	10.990
SRR9715739	Root	0.770
SRR9715742	Root	3.109
SRR9715743	Root	2.288

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.015
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.405
SRR8400027	Control - Root	0.594