Gene detail

Gene detail information of Glyur001009s00021078.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G44850.1	0	Protein kinase superfamily protein
NR	XP_003540211.1	0	PREDICTED: SRSF protein kinase 2-like [Glycine max]
COG	YP_004584373.1	8.00E-10	serine/threonine protein kinase with PASTA sensor(s) [Frankia symbiont of Datisca glomerata]
Swissprot	tr\|P51567\|AFC2_ARATH	2.00E-25	Serine/threonine-protein kinase AFC2
trEMBL	tr\|I1LTP7\|I1LTP7_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA12G30440.1}

Sequence

Transcript Sequence

>Glyur001009s00021078.1
CTAAACAGTCCGGAGTGTGTATAAAATCTGGTTTAAAAAGTGTCAAAATATAACAACCGTCCTGGATGTTGTGTCTATTGTGGTTTTTTCGTTTCTGAACAAAGATTTTTTCTTTTCATTTCTCTCGTTTTGTTTGTTTTCCCGGCAAGACCACTAAAAAACCCTAATTTCCCATATCCCACCGTTCACCGAATTCAAGGGTTCCCTTTGCCTCCATCTCACTCCAACATTTCTCATCTGCGACCATTACTGGTCACCATCAATTCATCGTCGTTGAAATTTCCATTTTTTGTTATAGTTTCTGTGGCTTCAGTGCATCGATATCGCTAGTTGGTACTTCTGTAGAGTTTGGTTTGTCCTTCAAATGGCGGAGGACCACAATGAAGGGAGCGATTACAGTTCGGAGGACGAAGGCACTGAGGATTACAGGCGCGGAGGGTACCATGCGGTTCGGATTGGTGACACTTTCAAAAATGGGTGCTACGTGGTGCAGAGCAAGCTCGGTTGGGGTCATTTTTCCACTGTTTGGCTCGCTTGGGATACTCAGAAATCGCGATATGTTGCCTTAAAAATTCAAAAGAGTGCCCAGCACTACACTGAAGCAGCAATGGATGAAATAAAGATTCTCAAACAAATTGCTGATGGGGATCCGGATGACAAGAAATGTGTTGTAAAACTTTTGGATCACTTTAAGCATTCAGGGCCNAATGGCCAGCATGTCTGTATGGTATTTGAATTCCTTGGTGATAATCTTCTCACCCTTATCAAGTATAGCGATTATCGAGGTGTTCCCCTTCCCATGGTCAAAGAAATTTGTTTCCATATTTTGGTGGGTTTGGATTATTTGCATCGTGAGCTTTCTGTAATACACACTGATTTGAAGCCAGAGAATGTCTTGCTTCTCTCTCCAATAGATCCATCTAAGGATCCTGGAAAATCAGGAGTCCCGCTTATACTTCCAAACAACAAGGACAAGACCGTGTCCAAGAATGGGACCACAAAAGATGATAAAAGTTTGAATGGAGATCTGACCAAGAACCAGAAAAAGAAAATGCGGAAAAAGGCTAAAAAAGCAGCTCAGGGTCGTACTGGGAAGGAAAATGCCGAGGAAGTAGAGGAGGATTCCAAAGCACCTGAGCAAGACAATTGTAGTGATGATGTGAAACTAAGTGTAGAATCTGGTGAAGGTAAACCTAATAGTCACGCAAGTAAAGATGAATCAACAAAAACTTTTGACACTACAGAAGTTCCACAAGGAAGTCATGGTCATAGGAGAGGTAGCTGCTCTACCAGAAAGAAGTTACTTGCAGCTGTTGATCTTAATTGCAAGCTGGTTGATTTTGGTAATGCCTGTTGGACATATAAACAGTTTACAAATGATATTCAGACAAGGCAGTATAGATGTCCTGAGGTTCTTCTTGGTTCTAAATACTCAACTCCAGTAGATATGTGGTCCTTTGCTTGCATTTGCTTTGAGCTTGCCACTGGTGATGTTCTTTTTGATCCTCACAGTGGTGATAACTATGACAGGGACGAGGATCATCTGGCATTGATGATGGAGCTTCTTGGAATGATGCCTCGCAAGATTGCACTTGGCGGCCGCTATTCCCGGGACTTTTTCAATAGATATGGTGATTTGAGGCACATTCGTCGGTTGCGTTTCTGGCCTCTTAATAAGGTGCTGATGGAGAAGTATGATTTCAGTGAGCAAGATGCAAGTGACATGGCTGACTTCCTTGTTCNATTACTTGATTTTGTCCCTGAAAAGAGGCCAACAGCTGCTCAGTGCCTTGGTCATCCATGGATCAGTGCAGGTCCTCGGACTCTTGAGCCCTCACTGACTAATGAGCAACCTGATGCTGTTGACCGGGAAAAGTCTGAAAAGTTGAGNGAAAAGGCTGCACAGGAGGCTGTGGAAGTTGGTATGGGGAATATGGCTATTGATGAAACTCCAAAGCCACTCAAAGATTTTCAGTCTACAAAGCCATCAGAGTAGATGCAAATTGGCTTGTTTGGGTGGTATATGCAACCTGTTATTTTTATATGGTAAGCTTGATGGTCCTTGGAGAGTGATATTCTANTTAACTGTTGAATTGAGCTTTATGTGCAAATAGGTCATACTTGGAGGTTGTGATTTGAGAAGCCCTTCATAGGGTAAGGGAAGCTGGATGTCTGTTACTATGGAGTAATACCACCACTTGTTTCGCCTATTACAGAACAGAATGTCTAAAAGATAGCTTCCTTCACATTCAATAGAGTGCACTAATTTATAACAACGAGGGTTCTTATTCTTTTTGGAGAGTTTGTTTGAAACTTATCCCTAGATTAGATGTTCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01009	21690	25769	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.5.7

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001009s00021078.1	PF00069.20	Pkinase	40	180	1.60E-21
Glyur001009s00021078.1	PF00069.20	Pkinase	318	481	4.10E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.980
SRR1783600	control	6.986
SRR1783602	moderate drought stress	6.656
SRR1811619	moderate drought stress	6.649

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	14.988
DRR006520	Root Summer glycyrrhizin high producing strain	14.882
DRR006521	Root Winter glycyrrhizin high producing strain	7.878
DRR006522	Root Winter glycyrrhizin high producing strain	7.460
DRR006523	Root Summer glycyrrhizin low producing strain	18.473
DRR006524	Root Summer glycyrrhizin low producing strain	18.658
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.306
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.170

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	20.868
SRR2868004	Drought Stress (root)	17.562
SRR2967015	Control (root)	18.607

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	13.710
SRR9715740	Leaf	16.588
SRR9715741	Leaf	14.947
SRR9715739	Root	6.421
SRR9715742	Root	12.032
SRR9715743	Root	11.483

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	12.436
SRR8749028	MeJA induced 9h	13.390
SRR8749029	MeJA induced 9h	8.571
SRR8749030	Uninduced	7.044
SRR8749031	Uninduced	6.585
SRR8749032	Uninduced	4.824

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	16.093
SRR8400027	Control - Root	15.473