Gene detail

Gene detail information of Glyur001009s00021077

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G22830.1	8.00E-138	magnesium (Mg) transporter 10
NR	KEH38916.1	0	magnesium transporter MRS2-like protein [Medicago truncatula]
Swissprot	tr\|Q058N4\|MRS2B_ARATH	0	Magnesium transporter MRS2-11, chloroplastic (Precursor)
trEMBL	tr\|A0A072VBF4\|A0A072VBF4_MEDTR	0	Magnesium transporter MRS2-like protein {ECO:0000313\|EMBL:KEH38916.1}

Sequence

Transcript Sequence

>Glyur001009s00021077.1
CCAGTTCCATCAACTTCCTCGGAACAGAATACTGTAAAAACCTACAAATATAATAATGATAAAAAAATTATATTATAGTAAGTAAGAGCCATGAATAATAATAAAAAAAGCAAATCCGGATAAATTATTCATCTGTTTCGTTTTGATCGTTACGCAGAGCGAGAGACAGCTCCAACCAACTATCCCATTCCCGTTCACGGCATGCATGACTACCATAACCGCCACCGTAACCGTACACCGCACCTGAACTAAACTAACATGGCTTTAACTTGGCCGCACCTTCTGCAGTTCCCTTCCCAACCATTGCTCGCGGCGCGCACCAACTACGTCTTCTTCTCCGATCTCACCGGATTCCGCTCTCCTGAACCTCCGGGACATGATTCTCTCGCTCTTCTACGCCGGAGCAAGATCTCCGTCGCATCGCCGCCGGCACTGAAACCGGTGAAATGCCTCGGCAGATCAACGGAGGAGAAGCCGTGGAGCGACGCCGAAACCGTCGTGTCTGCCTCCGATGAAGATGAAGAAGCTGCGGATGATAATACAAATGGTCAGGCTCCGAGCCGAACTTCCGTCTCTGCCAACGGTGTTGAGTCTCAGAGGATTGCTTCCACCTCTTCTGGCGACTCTCTGTCTCTCGGAATTCGGGAACCTGTTTATGAAGTTGTAGAAGTGAAATCAAATGGGACAGTGTCGACTAGAAAAATCAACAGGAGACAATTGCTGAAGTCAAGTGGTCTTCGTCCACGGGACATTCGAAGTGTGGATCCATCATTGTTTTTGACAAATTCAATGCCTACTTTACTGGTCCGTGAGTATGCTATACTTCTAAATCTGGGTTCACTACGAGCAATAGCAATGCAAGATTGTGTACTGATATTTGACTATAATCGTAAAGGAGGGCAAGCTTTTCTAGAGACATTGCTGCCTCGATTGAACCCCAAGAGCAACAATGGAGGTCCATCAATGCCATTTGAAATCGAGAAGGATCTAAAGATGGTGACGACTCCAGTGCAGAAGGCCAAGAGACGTGTAGCCTTAAAAGTTGTTGAAGCAGCATTGCTTTCAAGAATACAACGTTTGGAGCGGAGACTGATGGACTTAGAACCTCGTGTTCAAGCTCTTCTTGAGGCTTTGCCAAATCGGATAACTGGTGACATATTGGAGCAACTTCGTATTAGCAAACAAACTTTGGTTGAGTTAGGTTCTAGGGCAGGAGCTCTCAGACAGATGCTGCTTGACCTTCTGGAGGACCCTCATGAAATACGGCGGATATGTATCATGGGAAGAAACTGCACACTTAATAAAGGAAACAATAATGTGGAATGCTCTGTGCCCTTAGAAAAGCAGATCGCTGAGGAGGAGGAGGAGGAAATTGAGATGCTTCTGGAAAANTATCTTCAAAGATGTGAATCTTGCCATGGTCAAGCTGAGAGGCTTCTTGATTCTGCAAGGGAAATGGAAGATTCTATAGCTGTCAGCTTGAGCTCACGAAGGCTTGAGGTTAGCAGGGTGGAACTGCTTCTCCAGGTTGGAACATTCTTTGTGGCAGTTGGTGCCCTAGTAGCAGGTATATTTGGCATGAACCTGAAGTCCTATCTTGAGGAACATGTGTTTGCATTTTGGCTGACAACAGCTGGGATAATTATTGGTGCCGTTATTGGCTTTTTTCTTATGTATTCCTACCTCAGAGCAAGGAAAATATTTTGATGAGATGAAACTTCTATTTTAGGTAATTTTATTACCTTTTAACCTGTTTTCCCAGCAATACTGCTCTAAACTTTTTTTCTTCCGAGATCTTGAGTATTAGCAGAGCTGTGGATCTATTATCATGATATTGCCAATATAACATCTTTAACTAAAGGTCATGTAGAATATGAAGAAAAGTANGCACCCAAAAAATGCAGTGATTTTACACGAGGATCAATCATCCAAAATGAGTTTGGAAGTATGCATGATATTACTCACATTGCTGAGCTGTGACAAGCATGGTTTTTTAATTCTTTTGGAGCGGGACAGACTCAGACAATTTTTTATTGCTTAATGGCTATTAGCCATCAAGAGATTCTTCCCTTGGTTGTTGTTTGTGTGGGTATTGTGTGCACTAAAACATTGGTTAGCTTTGACACTTTTTAGGGTCAAGGTTACAATATACATAAGCATTGCATGAAGAAGGCAGTTGAATGCAGGCGTCAATCAGCATTTTAGTTGGTAGTATATGATCAGGCGAATTTTTAGGGTGGTGATCAGGTAATTGTAAGTAACGATATCCAGAGTCACACGCGGTGCATGATATAACCAATCCTTGTGAAGAAATTAAAACACTGTAAANTTGACACCATACGAAGTAAAAACTAAAAACAGTGGACAGATATCTGCTCCTTTAATTATCTGGCTGAGCACCAAGTTCTTGTGAAAGTTTGAAAGATGAAAGAGAAAACATCAATGAGGACCTTTGTTCTCTCAAAATAAAAAAAACCGGCGATCCAAATTCCTTGTTCCAATTCCAAGGTCGCAAGGCCTGTTAACATTATTATTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01009	13894	20772	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0015693 magnesium ion transport

GO:0030001 metal ion transport

GO:0055085 transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function

GO:0015095 magnesium ion transmembrane transporter activity

GO:0046873 metal ion transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001009s00021077.1	PF01544.13	CorA	366	471	1.90E-06
Glyur001009s00021077.2	PF01544.13	CorA	366	471	1.90E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.551
SRR1783600	control	9.513
SRR1783602	moderate drought stress	7.419
SRR1811619	moderate drought stress	7.317

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	14.261
DRR006520	Root Summer glycyrrhizin high producing strain	14.076
DRR006521	Root Winter glycyrrhizin high producing strain	5.497
DRR006522	Root Winter glycyrrhizin high producing strain	5.516
DRR006523	Root Summer glycyrrhizin low producing strain	3.953
DRR006524	Root Summer glycyrrhizin low producing strain	3.962
DRR006525	Leaf Summer glycyrrhizin high producing strain	76.930
DRR006526	Leaf Summer glycyrrhizin high producing strain	76.460

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.213
SRR2868004	Drought Stress (root)	5.433
SRR2967015	Control (root)	4.010

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	70.278
SRR9715740	Leaf	93.521
SRR9715741	Leaf	87.161
SRR9715739	Root	2.840
SRR9715742	Root	9.730
SRR9715743	Root	7.489

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.022
SRR8749028	MeJA induced 9h	2.777
SRR8749029	MeJA induced 9h	1.360
SRR8749030	Uninduced	1.922
SRR8749031	Uninduced	0.606
SRR8749032	Uninduced	0.863

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.175
SRR8400027	Control - Root	13.384