Gene detail

Gene detail information of Glyur001009s00021073

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G22810.1	1.00E-63	GDSL-like Lipase/Acylhydrolase superfamily protein
NR	KHN21470.1	6.19E-127	GDSL esterase/lipase [Glycine soja]
Swissprot	tr\|Q9FFC6\|GDL78_ARATH	2.00E-91	GDSL esterase/lipase At5g22810 (Precursor)
trEMBL	tr\|I1LTQ0\|I1LTQ0_SOYBN	1.00E-125	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA12G30480.1}

Sequence

Transcript Sequence

>Glyur001009s00021073.1
CCTCATCATCAGTTCCCAATACTGTAACCCCATCTTCAAAACCCTTCTCTCTCTGAAGAAGTTCATTGCTAAAGAGAAATTGAAAAGCATGGGGAATTCAAGTTATTTCATGACTTGCTACTTGCTTCTGGTTGTAGTGTTCAATGTGGCTAAAGGACAGCCTCTTGTCCCTGCATTGTTCATATTTGGTGACTCTGTTGTTGATGTGGGCAACAATAACAACTTATACACAATTATTAAAGCAAACTTCCCTCCCTATGGNAGAGACTTCAAGAATCACAATCCAACAGGGAGGTTTTGCAATGGAAAGCTTGCATCAGATTACACTGCTGAAAACCTTGGATTTACCTCTTACCCACCAGCTTACCTCAACTTAAAGGCCAAAGGAAAGAACCTCTTGAATGGTGCCAACTTTGCCTCGGGTGCTTCTGGCTACTATGATCCTACAGCCAAACTATATCATGCAATTTCATTGAGCCAGCAGCTGAAACACTACAAAGAATGCCAGAATATATTGGTGGGAATAGCAGGGAAGTCAAATGCTTCGTCAATTATATCTGATGCTATATATCTTATTAGTGCTGGGAGCAGTGACTTTATTCAGAACTACTACATAAATCCTCTGCTTTACAAGGCTTACACTGCTGATCAATTCTCAGACATTCTCATGCAAAACTATGCCACTTTCATTCAGGCATGTTTTTTTGAAGCAAGGAAGGCTTGTTGTGGAACGGGCTTGCTAGAGACATCTATATTGTGCAATCAGAAGTCCATAGGAACATGTGCCAATGCTTCCGAATATGTATTTTGGGATGGTTTTCATCCCTCAGAGGCTGCAAACAAGGTTTTGGCCGATGATTTGCTTACTGCTGGCATCTCTCTCATATCCTAATCCAACACTTTTTGGGTCATCATCTGCTTTTTTTTAAAGTGTTGTGTGATTGTTGCTGTTAAATCAAATGAGTTTGGCTTGTGTAAAAGGAGCTTGAATATGTTTAATTACAACGCTCACTATGTTTTTTCATTCGTGTAATAAGACCAAAATTCATGTAAGCTCCGTGTAAATTTTCTGTTTTTGGGTGTTCAAAGCTGCTGCTGCTGGATTTTGCTCCCCCTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01009	4019	6009	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0016788 hydrolase activity, acting on ester bonds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001009s00021073.1	PF00657.17	Lipase_GDSL	30	202	2.90E-10
Glyur001009s00021073.1	PF00657.17	Lipase_GDSL	234	257	3.20E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.745
SRR1783600	control	7.756
SRR1783602	moderate drought stress	4.924
SRR1811619	moderate drought stress	4.800

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.861
DRR006520	Root Summer glycyrrhizin high producing strain	8.026
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.967
DRR006524	Root Summer glycyrrhizin low producing strain	1.019
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.250
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.249

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	37.080
SRR2868004	Drought Stress (root)	30.772
SRR2967015	Control (root)	12.975

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.751
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.078
SRR9715739	Root	11.899
SRR9715742	Root	9.674
SRR9715743	Root	7.479

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.251
SRR8749028	MeJA induced 9h	0.060
SRR8749029	MeJA induced 9h	0.321
SRR8749030	Uninduced	0.020
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	54.256
SRR8400027	Control - Root	35.808