Gene detail

Gene detail information of Glyur001007s00026105

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G72450.1	3.00E-22	jasmonate-zim-domain protein 6
NR	XP_004510528.1	6.90E-128	PREDICTED: protein TIFY 11B-like [Cicer arietinum]
Swissprot	tr\|Q9C9E3\|TI11B_ARATH	2.00E-25	Protein TIFY 11B
trEMBL	tr\|I3S7F0\|I3S7F0_LOTJA	2.00E-124	Uncharacterized protein {ECO:0000313\|EMBL:AFK36192.1}

Sequence

Transcript Sequence

>Glyur001007s00026105.1
GAATATTTTTTCTAAAAATTAAAAATTAGGAAGATAAAGACCACATGGTCTCACCCCCATCTTCCTCAGACCAAAGCAGATTCAAGGAACATGCTTAGTTAGAAGGAAAAAAAAAATCCAATCTTCCCCATTGTCTCTCACTTCACCCCTCTCAAAATACCCAACCATATGAACTNAAAAACAGGGTCACCAAGCATCAAAAAGAGATTTTTTTTTCTCTCCCATAAACAGAATCAAATCAGCTAAGATCACATATCTTTTTTTCCCTTGGTGGGGTTCTGTTAAAAATGTCAACTTTCCCCAATACGGTGTCGGATGGCCGGAGATCCGGCAAGGTACCGGAGAAGTCGANTTTCTCACAGACTTGCAGCCTCTTGAGCCAGTTTTTGAAGGAAAAGCGCGGTTCTGGAGATTCTACCCCTGGAATACAAAGGAAATTGGAGCCTAGAGCGAGTACGAAGGATTTGTTAGCCAACATGCAAAACTCAGATGGGGCTTTGAGACTAAATGCTTCTGCTATGGATTCTCTTCCCCGGCTTGTGGAAAACCCCTGCATTAAGAAGTCTAATGTGAGGTCAACGGGCCCTGAAACTCCCCAATTGACATTATTCTATGACGGAAAAATGTTAGTATTTGATTCTTTTCCGCCTGAGAAGGCGACAGAGGTGATGGAGTTGGCCACCAAGTTAGCCTCTGAAAATCCGAGCACTGAAGAAAATCCCCCCAGTGCTTCTGTCACTACTGAAAAGTTGAACGATTCCAAAGTGCCTCAGACAAACACTCCCTTAGAAACACCTCGACCAACTGGAAACCAAGCTGTTGGTTCAGATATGAGGTATCCAAGGAGAGCTTCACTTCTAAAATTTCTTGAGAAGAGAAAAGAAAGGGTCATTGCCAGAGGACCTTATCAAATTAACAACCCCAAGCATGAGGGTAGCAGTTCAGGAGGTGAACCTGAAGATCAACACTTTGACCTTAACTTGTAGTGATTTAGGCTCATCATGAACTTTAGGTTATACAGGCTAGCTCTGGCCAATTTCAAAATGCCCTTCCTAANTATGTGATTTGTAAGGCCTTTTGCAGATTGGTGTGGCCTTCGTACAAATTTACAATATATATTATTTTATCAATTAGGTCCAATGCCGCGGATCAAACCAGAGAAGAATTTGCCATTACTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01007	91570	94113	-

Gene family

Gene family	subfamily
Transcription Factors Family	Tify

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001007s00026105.1	PF06200.9	tify	100	132	1.50E-15
Glyur001007s00026105.1	PF09425.5	CCT_2	186	208	3.50E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	21.776
SRR1783600	control	21.622
SRR1783602	moderate drought stress	18.821
SRR1811619	moderate drought stress	18.759

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	96.938
DRR006520	Root Summer glycyrrhizin high producing strain	95.899
DRR006521	Root Winter glycyrrhizin high producing strain	3.099
DRR006522	Root Winter glycyrrhizin high producing strain	2.951
DRR006523	Root Summer glycyrrhizin low producing strain	40.871
DRR006524	Root Summer glycyrrhizin low producing strain	40.428
DRR006525	Leaf Summer glycyrrhizin high producing strain	36.311
DRR006526	Leaf Summer glycyrrhizin high producing strain	36.005

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	50.694
SRR2868004	Drought Stress (root)	106.565
SRR2967015	Control (root)	53.790

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	825.157
SRR9715740	Leaf	626.617
SRR9715741	Leaf	993.786
SRR9715739	Root	57.892
SRR9715742	Root	285.511
SRR9715743	Root	224.575

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.868
SRR8749028	MeJA induced 9h	38.552
SRR8749029	MeJA induced 9h	16.096
SRR8749030	Uninduced	130.940
SRR8749031	Uninduced	37.023
SRR8749032	Uninduced	58.361

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	72.531
SRR8400027	Control - Root	72.123