Gene detail

Gene detail information of Glyur001007s00026103

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G14110.2	2.00E-97	Tetratricopeptide repeat (TPR)-like superfamily protein
NR	XP_003627353.1	0	Tetratricopeptide repeat protein [Medicago truncatula]
Swissprot	tr\|Q940U6\|FLU_ARATH	2.00E-119	Protein FLUORESCENT IN BLUE LIGHT, chloroplastic (Precursor)
trEMBL	tr\|G7L8A8\|G7L8A8_MEDTR	0	Fluorescent IN BLUE LIGHT protein {ECO:0000313\|EMBL:AET01829.1}

Sequence

Transcript Sequence

>Glyur001007s00026103.1
GTGGGATTGTATTGTTATCCCAACCCAACCCAACCCAACCCATTCTCAACGTTTTATCCTCTCAGCTCAGCAAAAACAGCCTCTTTAGTGCGCAGATGAGAGCAATGGCGGTTGTGGTCCGTTGCTCCTGCTTCCTCTCTCCTCCTCACTCCCCACATCCCCAATTCTGCCCCAACAACTCCAAGCCCCACCTTCCTGGAAAATTGGCTTGTCTTTCTTTAAAAGTGGACAAGGTTGTGCCACTCTTTAAAGATACCTTTGATGGGTCTTCTAAAATTCCAAGTGTGCTGCACTGCTCAAAGTGTAAGGAAGAAATGCCCCAAAGGTTCCCTTCACTATTATTTCTTGCGAGCAATGTTTTGATGTTCTCTATGCCTGGTAAAGCTTTGGCTGAAACATGTGAGGCTGATAACTCTTTTTTCAATATGCCTATACTGCTAGGAGTAGCCCTCATTGGAGCCACTGTAGGAGGGTTGCTTGCTCGACAAAGGAGAGGAGAATTGCAGCGGGTAAACGAGCAATTACTCCAGATCAATGCAGCTTTAAGGAAGCAAGCCAAAATTGAGTCCTATGCCCCTACCTTGAGTTATGCTCCCATTGGTGGTGGCAGGATACCTGATAGTGAAATTATTGTTGACCCAAAGAAGCAGGAGCTTATTTCTAAGTTAAAAAGTGGAAAGAACTTTCTAAGGAATCAACAGCCTGATAAAGCATTCACGGAGTTTAAGATTGCGCTCGAGCTAGCCCAGAATCTGACGGATCCTATNGAGGAGAAAAAAGCTGCCAGAGGTCTAGGGGCCTCACTGCAAAGACAGGGAAAATACCGAGATGCGATTAAATACCATTCCATGGTTTTGGCCATATCTGAAAGAGAAGGAGAGGACTCTGGGAACACAGAAGCTTTTGGGGCAATTGCTGATTGTTACACTGAGCTTGGAGACCTTGAAAAAGCAGGGCTATACTATGACAAGTATATTGCAAGGTTGGAAAAGGACTAATCCTTCATTTATTGAAAAACCTTAACCATGTAGAACTACTACTAGAGTTTCCTCCTGGCCTATCACCATCTTTTTCATGCGGTTTTTTTTTTTTTGAGAGGAGGGGGGTGGAGGTGCAATTCATGCTCCATGAGTTCATGTTTGATTTATGTTAAGCTGTTATTTAGATTATAAAGTTGATGTTATGCCGTTTTTAAAAGGAGACTTTTAATTAAAATTAGAGATAATC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01007	68539	71289	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001007s00026103.1	PF13424.1	TPR_12	229	299	6.10E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.523
SRR1783600	control	12.696
SRR1783602	moderate drought stress	16.171
SRR1811619	moderate drought stress	16.067

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	17.215
DRR006520	Root Summer glycyrrhizin high producing strain	16.681
DRR006521	Root Winter glycyrrhizin high producing strain	23.941
DRR006522	Root Winter glycyrrhizin high producing strain	23.163
DRR006523	Root Summer glycyrrhizin low producing strain	16.445
DRR006524	Root Summer glycyrrhizin low producing strain	16.389
DRR006525	Leaf Summer glycyrrhizin high producing strain	15.411
DRR006526	Leaf Summer glycyrrhizin high producing strain	15.309

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	15.797
SRR2868004	Drought Stress (root)	13.100
SRR2967015	Control (root)	15.615

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	22.981
SRR9715740	Leaf	29.396
SRR9715741	Leaf	17.696
SRR9715739	Root	16.858
SRR9715742	Root	11.708
SRR9715743	Root	11.587

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	31.864
SRR8749028	MeJA induced 9h	141.267
SRR8749029	MeJA induced 9h	107.416
SRR8749030	Uninduced	69.798
SRR8749031	Uninduced	47.622
SRR8749032	Uninduced	58.114

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	18.491
SRR8400027	Control - Root	19.298