Gene detail

Gene detail information of Glyur001006s00028646

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G11670.1	0	UDP-Glycosyltransferase superfamily protein
NR	XP_004497656.1	0	PREDICTED: digalactosyldiacylglycerol synthase 1, chloroplastic-like isoform X1 [Cicer arietinum]
COG	NP_489381.1	6.00E-07	hypothetical protein all5341 [Nostoc sp. PCC 7120]
Swissprot	tr\|Q6DW76\|DGDG1_SOYBN	0	Digalactosyldiacylglycerol synthase 1, chloroplastic (Precursor)
trEMBL	tr\|V7CXV9\|V7CXV9_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW34964.1}

Sequence

Transcript Sequence

>Glyur001006s00028646.1
GCAGTGCAGAGCCACGTGACTAACGTGAGCATAGAAAAGTCCCAAAACATCGGAAGCACAAAAGCACCACACACCACCCTCACCACCCTGGTTGTCATTGTCACTCACACTCCTTCAACTCTCAATCTCAATTTTCATTCTGCCATGGCGGCACATCCCCAACCTCCCTCTTCCTCCAACGCCTTCTCCTTCCTCTCCAAGGGCTGGCGCGAGGATCTCCGCCTCATGCGAGACCGCGCCACCTCCTTCCGTAACCACCTCGCCGCCACGTCATCATTCGATGACTCCCCCCTCCTCCCTCCGTTCTCCGCTCGACCTCCTCCGCTNCCGGTGGAGCTCGACTTCGTGAGGAACCTTTGCCCCAGGCTGTCGGAGATTCCAAGGAGGACGAGGAGGGCACGGAGGAGGTCGAGGAACAGGATTAACCTGTCGGCGATAAGGGAGGCCATGGTGGAGGACATGGATGGGATTCTGGGACTTGACGAGGGCGAGAGAGGGAAGAGGTTTAGTTGTAGAGAGTTCTGGAGCGAGTTGAATAATGGCGGCGGGGATGATGAGGAGCACCACCGCCAATGGGATTGGGAGGAACCAATTCGAGCTTTCAAGACGAGGCTCAAACATGAGTTTGAGAAAAATAACAACCAGTTCATCCAGAAACTCAAATCAAGCTTCAAATCAATGTGCAAGGAGCCTCAAGAATCAAAGGAAGTTTGCCCATTGGATGCGTCTGAGCTTCTGGCCTATTTTGTTAGACAATCTGCACCATTTTTGGATCAACTTGGAATCAGNAGAGATATATCTGACAAGATAGTGGAAAGCTTGTATAGCAGACGTACTAAGAACCAATGTCTACTGCATTCCTTTTCTGAGGAAGAATCTCNTGTTCTTGGGAATGGAAACATAANCGATGAATTGGATTTGAGAATTGCAAGTGTTCTTCAGAGTACCGGGCACCGATATGATGGTGGATTCTGGACAGACCATGCGAAGCATGATCGGTCAGAGAATCAAAGACATGTTGCAATAGTCACAACTGCTAGTCTTCCTTGGATGACAGGAACTGCTGTAAACCCACTATTTCGAGCTACTTATCTATCACAATCTTCAAAGCAGAAAGTTACTCTGCTACTTCCATGGCTTTGCGCATCAGATCAAGAGCTAGTTTATCCCAGCAATCTCACTTTTACTTCACCAGAAGAACAGGAGGTTTATATATGCAATTGGCTTGAGGAAAAAACTGGTTTTAAGGCTGACTTCAAAATTTCATTTTATCCTGCAANGGTAGATTTGCTATGGAGATATTTATTTATATTTTCAAGAGAAAGGCGAAGTATAATAGCTGCTGGTGATGCTTCTCAATTTATACCATCCAGTGATGCTGACATTGCTATTTTGGAAGAACCGGAACATTTGAATTGGTACCACCATGGTAAACGTTGGACGAAGAAATTCAACCATGTAGTTGGTATTGTTCACACAAATTACTTAGAATACATCAAGAGGGAGAAAAATGGGGCTCTCCAGGCATTCTTTGTGAAACACATAAACAACTGGGTTACAAGAGCATACTGCCACAAGGTTCTTCGTCTCTCAGCTGCCACTCAGGANTTACCCAAGTCTGTAATTTGCAATGTTCATGGTGTGAGTCCGAAGTTCTTAAAAATTGGAGAAAAGATTGCTGCAGAAAGAGAGCTTGGGCAGAAGCCCTTCACAAAGGGGGCATATTTCTTGGGGAAGATGGTATGGGCAAAGGGATATAACGAATTGATACATTTATTAGCAAAGCATAAGAATGACCTCGATGGCCTCAACTTGGATGTATTTGGTAATGGAGAGGATGCTAATGAAGTTCAGAGTATGGCTAAAAGGTTGGATTTGAATATCAANTTTCAGAAAGGACGGGACCATGCGGAGGATTCTCTTCATGGGTACAAAGTCTTCATAAATCCNAGTGTTAGTGACGTGCTCTGCACCGCAACAGCNGAGGCACTTGCCATGGGAAAGTTTGTAGTTTGCGCNGATCATCCATCAAACGAGTTCTTCAGGTCATTCCCAAACTGTTTGACTTACAAGACATCNGAAGACTTTGTGGCAAAAGTAAAAGAAGCATTAGAAAATGAGCCTCATCTTCTTACACCTGAGCAAAGACATCAACTTTCTTGGGAGGCTGCTACNCAAAGATTCATGGAATATTCTGAGCTCGACAGAGTGGTGANCAAGGAAAAGGATGCAGCAAAATCNAGTAATGATACCGGAAAGCTCATTGCTAATTTGCTTCCGATGCCTAATCTGACCGAACTAGTNGATGGAGGATTAGCATTTGCTCACTACTGTCTCACCGGGAATGAATTCCTGCGCTTATGTACNGGAGCGATACCTGGGACGCGTGACTATAACAAGCAGCACAGTATAGACCTTCAACTCTTGCCCCCACAGGTAGAAAATCCTATCTATGGCTGGTGAAGATTGACCAGTACAAGAAGCATTGTAAATTCCTTCATCTCAAATCCCCACAGGTAAATTATGACAACCGAAGGTACTGGTTGGACTGGTTAGAGCTTTGAAAGTTCAGACAGAAGTTTCTTGTATGCTTTTGGGAGAAATGGCTATCAAAGATGCAGGATGTGATTAACTGCTAGCATATGACAGAGTAACACAAGGCTAGTTCAAGAGTAAGGCAGCTCAAGCCCTTGCTTTAGGTCNACCAGCAAANAATCATATTTATTACTAGTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01006	12861	19118	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K09480	E2.4.1.241	EC:2.4.1.241	Glycerolipid metabolism	map00561
			Glycerolipid metabolism	map00561

Gene Ontology

biological_process
GO:0009058 biosynthetic process

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001006s00028646.1	PF00534.15	Glycos_transf_1	575	714	2.10E-11
Glyur001006s00028646.2	PF00534.15	Glycos_transf_1	575	714	2.10E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.044
SRR1783600	control	5.962
SRR1783602	moderate drought stress	9.807
SRR1811619	moderate drought stress	9.796

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.514
DRR006520	Root Summer glycyrrhizin high producing strain	6.266
DRR006521	Root Winter glycyrrhizin high producing strain	1.428
DRR006522	Root Winter glycyrrhizin high producing strain	1.512
DRR006523	Root Summer glycyrrhizin low producing strain	1.874
DRR006524	Root Summer glycyrrhizin low producing strain	1.913
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.023
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.972

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	15.038
SRR2868004	Drought Stress (root)	15.666
SRR2967015	Control (root)	17.146

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	12.792
SRR9715740	Leaf	9.525
SRR9715741	Leaf	12.683
SRR9715739	Root	2.502
SRR9715742	Root	6.155
SRR9715743	Root	5.469

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.314
SRR8749028	MeJA induced 9h	2.536
SRR8749029	MeJA induced 9h	1.258
SRR8749030	Uninduced	0.249
SRR8749031	Uninduced	0.453
SRR8749032	Uninduced	0.688

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.772
SRR8400027	Control - Root	10.543