Gene detail

Gene detail information of Glyur001006s00028645.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G79550.2	phosphoglycerate kinase
NR	XP_003531483.1	PREDICTED: phosphoglycerate kinase, cytosolic [Glycine max]
COG	YP_007099668.1	3-phosphoglycerate kinase [Chamaesiphon minutus PCC 6605]
Swissprot	tr\|Q42962\|PGKY_TOBAC	Phosphoglycerate kinase, cytosolic
trEMBL	tr\|I1MJC7\|I1MJC7_SOYBN	Phosphoglycerate kinase {ECO:0000256\|RuleBase:RU000532}

Sequence

Transcript Sequence

>Glyur001006s00028645.1
CAAAAAAACGTTGGGCTAACAATTCCGGAGCCCTCTCTGGTCCATAGATTCTAGCTCCACTGCGCCCACCGTGCCACCCAAGTAAGATAAAAGCAGTTCCCTCACACGTGTGATTCACACGAGTGCCACACAGACCCCAAGCCAGCTTTTTTCTCTATAAATCTTCCAGAACGTTCCTGCGTTCTGTGTCTGAACTTTGATCCGTAACACACTCAGATTCCAACCAACCATTGTGGTGTTTTATTTAGATTTGTGGAAGGAAGAAGAATAAGAAGGAAATGGCTACAAAGAGGAGCGTGGGGACATTGAAGGAGGGTGATTTGAAGGGGAAGAGGGTGTTTGTGAGGGTTGATCTAAACGTTCCTTTGGATGATAACTTCAACATCACTGATGACACCAGAATCCGTGCTGCTGTACCCACCATCAAGTACTTGACTGGTTTTGGTGCCAAGGTCATCCTTTCCAGCCATCTGGGACGTCCAAAGGGTGTAACACCTAAATACAGTTTGAAGCCTCTTGTGCCAAGGCTTTCTGAACTTCTTGGAATTGAGGTTAAGATGGCTAATGACTGTATTGGGGAGGAAGTTGAGAAGTTGGTTGCACAAACTCCAGAAGGTGGAATTTTGCTACTAGAGAATGTGAGGTTCTACAAGGAGGAAGAGAAGAATGACCCTGAATTTGCAAAGAAGTTGGCTTCCCTTGCTGATCTCTATGTCAATGATGCATTTGGCACCGCCCACCGAGCTCATGCTTCTACCGAAGGCGTGGCTAAGTACTTGAAGCCTTCTGTTGCAGGATTCCTCATGCAGAAGGAGCTTGATTATCTAGTTGGAGCAGTGGAAAACCCCAAGAAGCCATTTGCTGCTATTGTGGGTGGGTCAAAGGTGTCTACCAAGATTGGAGTTATTGAATCCTTGTTGGGGAAAGTTGACCTTCTCTTGCTTGGTGGAGCGATGATTTTCACCTTTTACAAGGCCCAGGGTCATACAGTTGGGTCATCTCTNGTGGAGGAAGACAAGCTTGATCTTGCAACTTCACTTTTTGAGAAGGCCAAGGCTAAGGGAGTTTCCCTGTTGCTTCCAACTGATGTGGTCATAGCAGACAAGTTTGCTGCTGATGCTAACAGCAAGATTGTGCCAGCAACAAGCATCCCCGATGGATGGATGGGATTGGATATTGGACCTGATTCCATCAAAACATTTAATGAAGCATTGGATAAGACTCAGACCATCATTTGGAATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCACAAGGAACAGAGGCCATAGCCAAGAAACTGGCAGAGGTAAGTGGGAAGGGAGTAACAACCATAATTGGAGGAGGTGACTCTGTGGCAGCTGTGGAGAAGGCTGGACTAGCAGACAAGATGAGCCACATCTCCACTGGTGGTGGTGCCAGCTTAGAGCTCCTTGAGGGGAAGCAGCTCCCTGGTGTCCTTGCTCTTGATGATGCTTAAACAAAAAAAGAACATGAGATGGGACCATACATNACCTACCTTTGCATTTTGTGCTTTATAATATGGTCTTGGTTGGGTTTCAACCAATATTTGGATATAGAGAGCTAGGCTGCTCTTTGTAGAGGCTTAATATAGGATAGATTTTCAAAATAAAAGAGGTTTTTGTGCAATCCATGGTGTTTGCTTGATCAAGTTGTTCTNGAACAATGTTCATTTTTCGAAAGGAGTATGCTTTTGATTATGTGTTCCTTTGGCTTTCTTGGCGGCCACTTTTCTTCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01006	4116	9435	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00927	PGK, pgk	EC:2.7.2.3	Carbon metabolism	map01200
			Biosynthesis of amino acids	map01230
			Glycolysis / Gluconeogenesis	map00010
			Carbon fixation in photosynthetic organisms	map00710

Gene Ontology

biological_process
GO:0006096 glycolytic process

molecular_function
GO:0004618 phosphoglycerate kinase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001006s00028645.1	PF00162.14	PGK	9	390	4.40E-166

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	388.498
SRR1783600	control	390.553
SRR1783602	moderate drought stress	270.293
SRR1811619	moderate drought stress	268.903

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	453.317
DRR006520	Root Summer glycyrrhizin high producing strain	448.947
DRR006521	Root Winter glycyrrhizin high producing strain	435.433
DRR006522	Root Winter glycyrrhizin high producing strain	425.294
DRR006523	Root Summer glycyrrhizin low producing strain	621.704
DRR006524	Root Summer glycyrrhizin low producing strain	621.937
DRR006525	Leaf Summer glycyrrhizin high producing strain	183.671
DRR006526	Leaf Summer glycyrrhizin high producing strain	182.580

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	586.022
SRR2868004	Drought Stress (root)	394.146
SRR2967015	Control (root)	329.390

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	343.448
SRR9715740	Leaf	322.372
SRR9715741	Leaf	368.474
SRR9715739	Root	477.219
SRR9715742	Root	457.524
SRR9715743	Root	461.459

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	541.025
SRR8749028	MeJA induced 9h	663.313
SRR8749029	MeJA induced 9h	731.717
SRR8749030	Uninduced	211.512
SRR8749031	Uninduced	209.064
SRR8749032	Uninduced	403.595

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	419.027
SRR8400027	Control - Root	385.755