Gene detail

Gene detail information of Glyur001005s00027819.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G56960.1	3.00E-43	basic helix-loop-helix (bHLH) DNA-binding family protein
NR	XP_003547476.1	9.37E-158	PREDICTED: putative transcription factor bHLH041-like isoform X1 [Glycine max]
Swissprot	tr\|Q9LTS4\|BH041_ARATH	1.00E-50	Putative transcription factor bHLH041
trEMBL	tr\|K7MBY3\|K7MBY3_SOYBN	3.00E-158	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA15G18580.2}

Sequence

Transcript Sequence

>Glyur001005s00027819.1
ATGGTCATGGACGGCGTGTTCTCCCTCCCCGAACCCGCCAGAACCCTTTTTCTCCGCTCTCTACTGCACTCTCTTGGCTGCGCTTACATTTGTTTGTGGCGATATAATTCCAATTTATTCAATCGTTTGATATTCTTGGATGGTTTACTCTCGAGTGTAACAAACAACCAACCTAGCTCTAGCTCTAGCTCTAGCTCTTCTTTGGAATTGNAGAGGAGCAGTACTACTACTACTACTANTGCAGCTGAAAGCCTTTNTAGCCAATATCAGCGTTTAACGTTTGATGTCAAGAACGACTGTGTTCCAGGACTGGCTTTCAGGAACCACCTTCCCTACCTGGAGCTGCAACAATCGGATCTTCTAAGATTAACATCCACACAAATACAAACACAATTCTTTCAAGAAGCAAGGATTAAGACTGCTGTTTTCATGGGGTGCAACAAAGGGGAAATTGAGCTTGGGTTCTCGAATATGTCTCCTCAAGGTGACATTCAGACAACACTTGGGAATATATTTCCAGAAGATTTCTGTATACGGTACTCCCAATCAATTATTGATCATCAGAATCTACGTGCGTCATCATCTTCATCTTCATTGATATCAGCTACAACTACAGCAAGTAGCCCTCATGAATACTACTACTCATCCCTGTTATTCAATAATATCATACCGGCCAGTACTTCCCAGCTTGTAATTCCCACCACAATGCAACATCAAACTAGTACTGCCCCATACCATTACCACCAACAAATTACCAATAATATCCAATTAGAACTAGATCAAGCCATTAATCATCCAAGTCATCAACTAATCCCCACGCCAGAGGGTGAACAGGACGCAATAATAGGAGCACTCCATGTTATCTCTTCTTCACCTAGTTCTCATGATGATCAGCATCAACAACCCCAACAAAATTTGCCTCACCNCACTAATTCATTGGTACATATTCCAGAAGCTACTGCTTTCAAGAGATATACTATAGGTCNAAGTCCAACTATAACATCACCCCAAATGGGATCCAATTTTCAGAGGCAAAGCCTGATGAATAGATCACTTGCATTCTTTAGAAACTTAAATTCGCTGAGGATTATGAGACAACGCAATATTATTCAGGGGTCCTGTCCAGCGCCTAGTACCCAGCTCCATCATGTGATATCAGAGAGAAGAAGGCGTGAAAAACTCAATGAGAATTTCCAGGCACTTCGAGCACTACTCCCTCCAGGAACTAAGAGAGACAAAGCGTCGATCCTTAGAGCAGCAAAGGAGACAATGAGTTCCTTGATGGCTGAAATTGAAAAGCTTAGCTTGAGAAACCAGAATTTGATGATGANCCGTTTGTCCACAGCCAAAGAAGCTGCTACTACTGATGATCAGGAAATTAACAATGAAACATTGGGTGTTTGGGTTTCAGATTATGTGTATCCCGAATTAGCGAGCTCTTCAGATGAAGAGATGAGAATGGTGGAGTTGCGAGTGAGTGTGAGATCAGGNGGAGAAAGTTCTCAAGTTGATGTATTGACTACTCGATTATTGGAATTCTTAAAACGGGTTCAGAACGTGACCTTGATTTCCATGGCCGCAAATACCCATATCACACAAGGGACTACAGCTATTAATCAACTCACCTTCAGGCTAAGCATTATTGAGGGAAGTGAATGGGATGAGTCTGCCTTCCAGGAAGCAGTCAGAAGAGTGGTTGCTGACCTGATACAATGGCAGGGCAACTGGNCCAATAGCTATTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01005	93111	97265	+

Gene family

Gene family	subfamily
Transcription Factors Family	bHLH

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0046983 protein dimerization activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001005s00027819.1	PF00010.21	HLH	382	427	1.00E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.021
SRR1783600	control	0.021
SRR1783602	moderate drought stress	0.065
SRR1811619	moderate drought stress	0.065

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.053
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.053

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.120
SRR2868004	Drought Stress (root)	0.127
SRR2967015	Control (root)	0.240

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.407
SRR9715740	Leaf	0.429
SRR9715741	Leaf	1.937
SRR9715739	Root	0.014
SRR9715742	Root	0.129
SRR9715743	Root	0.051

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.122
SRR8749028	MeJA induced 9h	1.225
SRR8749029	MeJA induced 9h	0.104
SRR8749030	Uninduced	2.534
SRR8749031	Uninduced	0.218
SRR8749032	Uninduced	0.153

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.431
SRR8400027	Control - Root	0.347