Gene detail

Gene detail information of Glyur001005s00027817

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G29750.1	1.00E-178	CRS1 / YhbY (CRM) domain-containing protein
NR	XP_004507937.1	0	PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic-like isoform X1 [Cicer arietinum]
Swissprot	tr\|Q6YYA3\|CRS1_ORYSJ	2.00E-121	Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic (Precursor)
trEMBL	tr\|I1MSG5\|I1MSG5_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA17G06210.1}

Sequence

Transcript Sequence

>Glyur001005s00027817.1
ATGGCGCTCCAACCAATTCCNCTGACTTGTTGTCGCTCCTCTCCTCTGCATTTTCTGGTTTTCCAACCCCAAAGCCACTCCACTCTCAAATTCGCAGTTTCTTGTTCGAACGAGACAGCCGACACTCAACAAGTTAAGGTTGTAATAAAGAAGAAAAAGAAGAACAACTCCAGACCAAGCTTCTTCGACCAAATCCGAGATAAATGGTCCCTCAAATTGGGTTCCCAAAGAGNAAAATTCCCATGGCAAGAAGAGGAAGAAAAACCAGAACCAGAACATGAGGAACAGGAAGAACAATCACCAGCACAAGCAGAAGAAGAGTGCGACCGTGACCAGTTCCAGAACGAGTCTTCAACGAGTCACCCTCTGAATTTTCAGTTTCCAAAGCCTTTATCNCCTTGGGCCCAAGCAGAGAACCTTAGCAATCCACAGTTTCATTCTAAACCCGATGCTGGTGATGACGAAGACAATGGGATACCATTACAACAGAGCACTGGTGGTTCTGTTACGGAAAAAAGAGAGGTAATTGTGGGTGAGGAGGTGGAGAGAGTGAAGAAAAGGAGAAGCAACACGGAGTTGGCNGAGAGGTTGATTCCTGAACACGAGTTGCAGAGGCTCAGAAAATTGGCGTTGAGGACGGTGGAGAGGTTCGAAGTTGGAGTGGCTGGGATCACGCAGGAATTGGTGGCTTCCGTTCATCAGAGGTGGAGGGATAACGAAGTCGTCAAGTTCAAGTTTGGGTCCCCTCTTTCTGCTCACATGAAAAGGGCTCATCAAATCCTAGAGAGTAAAACTGGAGGTATAGTGGTATGGAGATCAGGTAGTTCCATAGTGTTATATCGAGGAATTACCTACAAGCTCCCCTGTGTAGAATTGTACACAAAAATGAATCGNGCTGAGGAGAATGCTGTGCATCACTCGGTTCATGTTGGAAGTGGAAGTGATGCTCGAGTAAGTNTGAAAGAAACGGTTGGAACTACAGAATCATTTAATGGAGACTCTGCTGCGGAGTGTTTGAAGGACATGAGNGAGGAAGAATTGATGGAACTGAGTGACCTCAACAATTTGTTAGATGAGTTGGGGCCGCGTTTCGAAGATTGGACGGGGCGTGAGCCTTTACCTGTTGATGCAGACCTATTACCTGCTATGGTTCCGGGATATAAAACCCCATTTAGACTTCTCCCTTATGGGGTAAGACCTTGTTTAAGCAACAATGAAATGACTGTCTTACGTAGGCACGCCAGAAGAATGGCTCCACACTTTGCCCTTGGAAGAAATAGAGAACTGCAAGGTCTGGCTAGATCTGTGGTAAAGCTGTGGGAAACAAGCGCTATTGCAAAAATAGCCATCAAACGAGGTGTTCCCCATACATGTAATGAAAGGATGGCTGAAGAACTCAGGAAATTGACTGGGGGAACTNTACTTTCTAGAAATAAGGAATATATTGTATTTTACAGGGGCAATGACTTCTTGCCTCCTGTTGTCACCAATACCCTGACTGAGAGACAGAAACTAACCCTTCTCCAACAAGATGAGGAAGAGAAAGCCCGGCAAAAAGCTTCATCTATTGCTATATCAAATAGAAAATCATCTCAAATGCCGTTATTAGCTGGCACCCTTGCCGAGACTAGGGCAGCGACCACCAACTGGGGACACCAACCAAGCAAACAAGAAGTTGAGAAAATGATGAGAGATTCTACCTTGGATAGACTTTCTTCANTAATCAGAAACCATGAGAAGAAACTAGCTCTAGCAAAAGCAAGGTTCAGGAAGGCTGACAAGGACTTAGCAAAAATACAGGGTGATCTGGACCCAGCCGATCTTCCAACTGATTTGGAGACATTAACTAGTGAAGAGAGATTTTTATTTAGGAAGATTGGTCTGAGTATGAAGCCATACTTACTTCTAGGGAGGCGAGATGTTTATGCTGGCACCATAGAGAACATGCATTTACACTGGAAATATCGTGAGTTGGTTAAGATAATTGTGAAAGGGAAAAATTTAGCACAAGTTAAGCACATTGCAATATCGTTGGAAGCTGAGAGTGGCGGGGTGCTAGTATCTGTAGATAAGGATACCAAAGGTTATATAATTATTATTTATCGTGGGAAGAACTATTTCCGCCCACGTGATCTGAGACCCAAAAGCTTGTTGACACGAAGACAGGCATTGGCTCGATCTATTGAGCTTCAAAGACGAGAGGCACTAAAACACCATATCTCAGACTTAGAGGAGATGATNGAGTTGCTCAAATCTGAACTAGAAGATATGAAGAATGAAAAGGAGATTGATGGTGACAGAACTCTGAGGTCAACACTGGGTANCCCTGTTTCTTCTTATGATGACTTGGAAGAGAATGAAGGGAGCGAGATTCATTTTGACAAAGATGACAGTGAGCAGAGTTGGTATAGTAACACCTTGAAATAGCTTGTGAAGGACTGAAGGTTGAGCATNGTGAGCGACTGAGAAGATGAAGAAGAATGTGAAAATTAAGCTACTGATCCATGTAGATGATAGCACAAACACTTGAGCCATGCTTGTGATGCGTCCCACAGGAAGCTTTTTCAAGACAGTGGGCAAGCAGGGATTATTATCGTTACTTCCCCTTGTCGACATCATTCATACTAGGGGAATTCTATCCTACCTCCAAGTGGTAGGAACACCCCTAAGTGATGTAACATGAGAAATGGTTAGTTCAGTTGTATGAATGATTAATTGCATCAGTGAGGCATGATTAATTCAGTTGGATAGATGGATAATACTATCCTTTGCATTAGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01005	59073	63598	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0003723 RNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001005s00027817.1	PF01985.16	CRS1_YhbY	200	281	3.90E-17
Glyur001005s00027817.1	PF01985.16	CRS1_YhbY	402	486	1.20E-17
Glyur001005s00027817.1	PF01985.16	CRS1_YhbY	615	702	7.10E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.875
SRR1783600	control	6.985
SRR1783602	moderate drought stress	8.434
SRR1811619	moderate drought stress	8.473

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.592
DRR006520	Root Summer glycyrrhizin high producing strain	10.310
DRR006521	Root Winter glycyrrhizin high producing strain	7.207
DRR006522	Root Winter glycyrrhizin high producing strain	7.048
DRR006523	Root Summer glycyrrhizin low producing strain	10.810
DRR006524	Root Summer glycyrrhizin low producing strain	10.522
DRR006525	Leaf Summer glycyrrhizin high producing strain	14.629
DRR006526	Leaf Summer glycyrrhizin high producing strain	14.688

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.026
SRR2868004	Drought Stress (root)	17.120
SRR2967015	Control (root)	19.481

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	18.645
SRR9715740	Leaf	28.251
SRR9715741	Leaf	19.278
SRR9715739	Root	1.221
SRR9715742	Root	12.117
SRR9715743	Root	8.951

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.766
SRR8749028	MeJA induced 9h	11.988
SRR8749029	MeJA induced 9h	6.921
SRR8749030	Uninduced	6.488
SRR8749031	Uninduced	2.053
SRR8749032	Uninduced	3.134

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	20.475
SRR8400027	Control - Root	21.662