Gene detail

Gene detail information of Glyur001005s00027815.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G56970.1	2.00E-164	cytokinin oxidase 3
NR	NP_001243813.1	0	cytokinin dehydrogenase 3-like [Glycine max]
COG	YP_001547531.1	2.00E-72	FAD linked oxidase domain-containing protein [Herpetosiphon aurantiacus DSM 785]
Swissprot	tr\|Q9LTS3\|CKX3_ARATH	0	Cytokinin dehydrogenase 3 (Precursor)
trEMBL	tr\|H7BRI4\|H7BRI4_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA17G06220.1}

Sequence

Transcript Sequence

>Glyur001005s00027815.1
ATGGCTGAAAAATACATTTTTTCTACCTACTTCATACTACTACTAATAACCATAACCCGTTTGATATCCACAGTGGGCAAAACCAAGCAATTATGGAAAACTCTGCTACCACCACCACCAGAGCTTGCCAATATATCCCACAAGCTCCATTACGACCCTGAAACCATCCAACTTGTTTCCAGTGACTATGGCAACAAGGTGCATGAATCCCCAGTAGCTGTGTTTCACCCATCTTCCATACACGACATAGCCACCTTGATTAAAATCTCATACAATAGCTCTGTCCCTTTTGGGATAGCAGTTAGGGGACATGGTCATTCCACTAATGGACAGGCCATGGCACGCGATGGGGTTGTGGTTGACATGGCCAGCTTCAGAAAACACACAATTGATCATGCAATTGGTGTCTCTGAGGACCCTTTGATCGGTTACTATGCTGACGTGGGAGGGGAGCAACTGTGGATTGATGTGCTACATGCCACTCTTCAACATGGACTTGCACCAGTTTCGTGGACTGATTATCTGTACTTGACTGTTGGAGGCACGCTTTCCAATGCTGGGATTAGCGGCCAGACATTCCGCTATGGACCTCAAATCACCAACGTTCATGAAATGGATGTGCTCACTGGAAAAGGAGATTTCGTGACATGCTCTTCTCAGAAGAATTCGGAGTTATTTCACGCGGTTCTTGGAGGGTTGGGACAATTTGGAGTTATAGCAAGGGCAAGAATTGCTCTTGAGCCAGCACCCAAAAGGGTTAAGTGGGTCAGACTGCTGTACAGTGACTTTTCTGCTTTTGCCAAAGACCAGGAACGATTAATCTCAATCAATGGAAGGAAACAAAATACTGCATTGGATTTTTTGGAAGGGATGCTGCTAATGCACCAAGGCTCCATAAATAATTGGAGATCCTCTTTCTTCCCTCTATCTGACCATTCCACAATAGCTTCTTTAATAACTAAGCATGGCATCCTCTACAGCCTTGAATTCGCTAAATACATTTATGATGACCAATCTGAAGAAAATGTGGACAAGGAAATTCAAGTTTTGCTCCAAGGACTAGCCTATATTCCTGGATTTTATTATGAGAAAAATGNCTCATATGTTGAGTTCTTGAATAGAGTCAGAAGTGGAGAGTTGAAGCTTCAGTCNCAAGGACTGTGGAATGTTCCTCACCCATGGCTTAATTTGTTCCTACCAAAATCTCAAATCTTGGATTTCAATTCAGGCGTATTCAAGGACATAGTTCTTAAAAGAAACATCACCAGTGGATCAATTGTCTTGGTTTACCCCATGAACAAAAGCAAGTGGGACGATAGGATGTCAGCAGCTATACCAGATCAGGAGGATGTTTTCTACACAGTTGGATTTTTACACTCAAGTGGATTTGATAATTGGAAAGCATATGAGGCTCAAAACAGAGAGATTTTGGAGTTCTGTAGTGATGCAGGCATTAAGGTTAAGCAATATCTTCCCAGCCACAGCACACAGGAAGATTGGGAAAACCATTTTGGCACCAAATGGAAGAGTTTCATGGAAAGAAAAAACCAGTTTGATCCAAGAATGATTCTATCACCTGGACAAAAAATCTNCAACAGCAATAATTATAACCACCAGCAGCGTGTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01005	42823	46373	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00279	CKX	EC:1.5.99.12	Zeatin biosynthesis	map00908

Gene Ontology

biological_process

GO:0009690 cytokinin metabolic process

GO:0055114 oxidation-reduction process

molecular_function

GO:0003824 catalytic activity

GO:0008762 UDP-N-acetylmuramate dehydrogenase activity

GO:0016491 oxidoreductase activity

GO:0016614 oxidoreductase activity, acting on CH-OH group of donors

GO:0019139 cytokinin dehydrogenase activity

GO:0050660 flavin adenine dinucleotide binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001005s00027815.1	PF01565.18	FAD_binding_4	71	218	2.10E-23
Glyur001005s00027815.1	PF09265.5	Cytokin-bind	250	530	1.80E-108

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.061
SRR1783600	control	0.064
SRR1783602	moderate drought stress	0.023
SRR1811619	moderate drought stress	0.023

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.365
DRR006520	Root Summer glycyrrhizin high producing strain	0.330
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.067
DRR006524	Root Summer glycyrrhizin low producing strain	0.067
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.066
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.023

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.664
SRR2868004	Drought Stress (root)	0.344
SRR2967015	Control (root)	1.143

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.123
SRR9715740	Leaf	0.078
SRR9715741	Leaf	0.020
SRR9715739	Root	0.000
SRR9715742	Root	0.218
SRR9715743	Root	0.509

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.174
SRR8749028	MeJA induced 9h	0.161
SRR8749029	MeJA induced 9h	0.432
SRR8749030	Uninduced	0.296
SRR8749031	Uninduced	0.611
SRR8749032	Uninduced	0.069

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.230
SRR8400027	Control - Root	0.866