Gene detail

Gene detail information of Glyur001005s00027811.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G56900.2	CwfJ-like family protein / zinc finger (CCCH-type) family protein
NR	XP_004507934.1	PREDICTED: zinc finger CCCH domain-containing protein 64-like isoform X1 [Cicer arietinum]
Swissprot	tr\|Q84WU9\|C3H64_ARATH	Zinc finger CCCH domain-containing protein 64
trEMBL	tr\|K7LYU8\|K7LYU8_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G16390.3}

Sequence

Transcript Sequence

>Glyur001005s00027811.1
AAAACTAATTGTGATACTGAGAAGCGAGTGTGGTCTCCCTTTTTTCATCTAAGCACTTGCTCTGTTCCGTCATGGCCCCGAGAATCCTACTGTGCGGCGACGTTTTAGGCCGCCTGAACCAGCTCTTCAAGCGCGTCTCATCGGTGAACAAATCTGCGGGCCCATTCGACGCGCTCTTGTGCGTGGGCCAGTTCTTCCCTGACTCACCGGAACAGGTGGATGAGTTCATGTCATACATCGAAGGTGGGTCCCATATTCCCCTCCCAACTTACTTCATCGGCGACTACGGCGTCGCCGCCCCCAAAATTTTGTCGGCAGCTTCCAAGGACCCCGCCAACCGTGGTTTCAAGATGGACGGCTTCAGGGTTTGCGATAATTTGTATTGGTTGAAAGGCAGTGGCAAATTCCACCTCTTNGGGTTATCTGTGGCCTATTTATCTGGTAGGAGATCATCCGGTGTTCAACTGTTTGGAACTTACAGTCAAGATGATGTTGATGCTCTGAGAGCAATAGCTGAGGAACCTGGAATTGTTGATTTTGGGGTTACAAATAGAGCAGCTGTTTNGGACATTCCTGCTGGATTCTCTGATTCTATAGGCAGTGATTCAGCCATATCAGAGTTAGTACAAGAGATTAAACCACGCTATCACATTGCCGGTTCTAAAGGTATATACTATGCCCGTGAACCATATGCCAATGCTGATGCTGTGCACATCACTCGTTTCATAGGGCTTGCTTCTGTTGGAAATAGAGATAAGCAGAAATTTATTCATGCAATTTCTCCGACACCTGCATCCACCATGTCTTCAACTGAGATTGCCATGAAAACCACGAATACCACCTCATCACCATACACATCTATGGAGAAAAAAGCTTCGCCAGAGGATAACACAAAGAGATCCAGTGATGGTATCTCTGATTCTCAATATTGGAGATATGATGTTGCTCAAAAGCGACAGAAACATGAAGGTGGAGATGGTGATAAGATGTGTTTCAAATTTGTATCTTCTGGCTCTTGTCCACGAGGAGAGAAATGCCATTTTCGACATGATATAGATGCAATGGAGCACTGTATGAGAGGTGTTTGTTTTGATTTTTTGAACAAGGGAAAATGTGAACGGGGTCCAGATTGTAACTTTATGCACAGCTTGCAGGATGAAGGTGATAGGCATCCTTCCAGGAGGCCTGGATCCGAAAATACTAGGCCTAGCAGATCAAGAGAATGCTGGTTTTGCTTGTCAAGCCCCAATTTGGAGTCACATTTAATTATAAGCATTGGGGAAAATTACTATTTGGCACTGGCTAAAGGTCCACTTGTTGAAGACCATGTGCTGATAATACCAGTTGAGCATATGCCAAATACCTTATCTCTGTCTTCTGAATCCGAAGTTGAGCTCTTAAGTTTTCAGAACAGTCTCAAGAGGTACTGCAAGAACCAAGAAAAGGAAGTCATCTTTTTTGAGTGGGCTTCTATACGTGGTACTCATGCCAATCTTCAGGCCATTCCCATTCCATCTTCCAAAGCAGTTATGGTTGAAAAAGCATTCAATTTAGCTGCACAAAAGTTGGGATTTGAATTTGTGGCAAAGAAATTCGATAGCATTTCTGATGGAAGAAAGTTTTTGAAGACACAAATTGATGGGAATTTAAGCTTGTTCTATGCCGAAGTACCAGGAGGCACAATTCTGCTGCATCATGTTGAGGAGAAAGAGAGATTTCCTGCCCAATTTGGGCGTGAGGTTATGGCNGGATTACTTAATATGGCAGATAATGCAGATTGGAGGAATTGCAAACATAGCAAAGACGAAGAGATGAAAATTGTTGAAGATTTCAAGAGCCGATTTCAAGAATATGATCCAAACTGTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01005	16171	20547	-

Gene family

Gene family	subfamily
Transcription Factors Family	C3H

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003824 catalytic activity

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001005s00027811.1	PF04677.10	CwfJ_C_1	380	492	6.30E-37
Glyur001005s00027811.1	PF04676.9	CwfJ_C_2	505	595	6.00E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	14.836
SRR1783600	control	14.829
SRR1783602	moderate drought stress	12.891
SRR1811619	moderate drought stress	12.765

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.438
DRR006520	Root Summer glycyrrhizin high producing strain	13.194
DRR006521	Root Winter glycyrrhizin high producing strain	16.336
DRR006522	Root Winter glycyrrhizin high producing strain	15.904
DRR006523	Root Summer glycyrrhizin low producing strain	13.767
DRR006524	Root Summer glycyrrhizin low producing strain	13.500
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.521
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.724

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	13.969
SRR2868004	Drought Stress (root)	12.639
SRR2967015	Control (root)	14.900

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.310
SRR9715740	Leaf	8.822
SRR9715741	Leaf	9.851
SRR9715739	Root	2.990
SRR9715742	Root	8.317
SRR9715743	Root	7.079

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.956
SRR8749028	MeJA induced 9h	12.160
SRR8749029	MeJA induced 9h	5.991
SRR8749030	Uninduced	2.454
SRR8749031	Uninduced	1.054
SRR8749032	Uninduced	1.430

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	18.608
SRR8400027	Control - Root	19.193