Gene detail

Gene detail information of Glyur001003s00035750

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G21380.1	8.00E-133	Target of Myb protein 1
NR	XP_004502552.1	0	PREDICTED: ADP-ribosylation factor-binding protein GGA3-like isoform X1 [Cicer arietinum]
trEMBL	tr\|V7AZ32\|V7AZ32_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW09496.1}

Sequence

Transcript Sequence

>Glyur001003s00035750.1
GTTGTTGTTTAATGAAATTAATAATTGGAAAAAAAAAGGGGGAGCCGGGCGCTGACAAGAAAAATGCGTGGGAGTGTCCAGAACGAACAAAAAGTCGGTCCCCAATCTTAAATTGAAGAGTCATATTGCCGATCATCGTCTTTTCTTTCTCATCTCACTTTCTTTCCGATACATATTCGAAAAATCCCTTCTCAATTCCGATTCTCAATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGTTGTAACAGGTTGAAAGTAAATAGGACTTGACTCGACTCGCTGGAGCCCTGAGAGAGAGACATGGCTAATGATGCATCTTCCTGTGCTGAGAGAGCAACTAGTGACATGCTCATTGGTCCAGATTGGGCAGTCAACATTGAGTTGTGTGATATCATTAACATGGACCCTAGGCAAGCAAAGGATGCATTAAAGATACTTAAGAAGCGTTTGGGCAGTAAAAATCCCAAAATACAGCTGCTGGCTCTTTTTGTGCTGGAGACCCTTAGTAAAAATTGTGGTGAAAGTGTATTTCAGCAGATCATTGAGCGGGATATCTTACATGAAATGGTTAAGATAGTAAAGAAGAAGCCGGACTTAAGTGTGAGGGAAAAGATACTAATTTTAATTGATACATGGCAAGAAGCTTTTGGAGGCCCAAGTGGAGTTTTNCCTCAATACTATGCAGCATATAATGAATTAAAGTCCGCTGGAGTTGAATTTCCACCACGAGATGAGAATAGCGTGCCATTCTTCACGCCTCCTCAAACTCAGCCGATAGTTCATTCCGCAGCAGAATATGATGATGCTGCTATTCAGGCTTCTCTTCAGTCAGATGCATCTGGCCTTAGTTTACCAGAGATTAAAAACGCTCAAGGAATAGCTGATGTATTGATGGAAATGCTCAGTGCCTTGAATCCANAAGACCCTGAGGGTGTGAAGGANGAAGTGATTGTTGACCTCGTTGATCAGTGCCGTTCTTACCAGAAGCGTGTCATGCATCTTGTGAACAGTACTGCGGATGAGGAGCTTTTAGGTCAGGGATTGGCACTGAATGACAGCCTTCAGCGAGTACTCCGTCAGCATGATGATATTGAACTGCTAACTCAGGTGCAAGAGAAACAGAAACTTCAGTTCTGCCACTTGTCGTCACGAGATACTCATGCACAGAATCGGAAACCAGCCTATGACAAGGCAGAGCCAGGGAGGATAAACCCACTTCTTCCCCCGCCACCAGCATCAAGTAAGCCAGTCTACTCCAGCACNGGCATGGTTGACTACCTTAGCGGCGATGCATACAAGGCAGAAGGAACCACTGAAAACCCAGAACCAACTTCACTTGCAGCTCCCCTTCATTCTAGCCCAAATCCTAACTCATCAACTATTCCAACTCAGTCTTCACCCCTTCCTCATGCAATGAATACCTCGTCACCAAGTTTTAGCAGACAGCCTGTGTATGATGAACCATCTCCAATAAACAAGTCGTCAGAACTGATGCCTCCGGCTCCCTGGGACGCCCAATCTTCCGTCGTCGTTCCACCCCCACCTTCAAAGTATAATCAGAGGCAACAGTTTTTTGAGCAACAAGTTTCATCGTCTCATTCAAGTAATGGATCCAGTTCTTCATATGACAGCCTTGTTGGACGAACTCAAAATCTCTCTCTGAACTCATCTACCCCAACCAAAGAACAGAAACCAGAAGATGCCCTTTTCAGAGATCTAGTTGATTTTGCAAAATCTAAAACCTCTTCATCTTCCAAACCCAATAGGTCATATTGAGATATATACTGTGTTTGTATGCTGGAACAGTTTATGAATGTTCATCTGATTTAAGCTTCNTCTCACCTAGGCGTCCACTTTGTGGTTTGTGTTTAGGAACCTTCAGACATGACTTGTCCATGCCCTGTGTGTTCTTAGTTCAATTAATATGCTACTACATATATTGC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01003	84197	91200	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006886 intracellular protein transport

cellular_component
GO:0005622 intracellular

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001003s00035750.1	PF00790.14	VHS	9	117	1.50E-29
Glyur001003s00035750.1	PF03127.9	GAT	185	272	1.50E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	41.136
SRR1783600	control	41.000
SRR1783602	moderate drought stress	42.624
SRR1811619	moderate drought stress	41.834

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	40.461
DRR006520	Root Summer glycyrrhizin high producing strain	40.401
DRR006521	Root Winter glycyrrhizin high producing strain	54.285
DRR006522	Root Winter glycyrrhizin high producing strain	53.943
DRR006523	Root Summer glycyrrhizin low producing strain	51.174
DRR006524	Root Summer glycyrrhizin low producing strain	50.281
DRR006525	Leaf Summer glycyrrhizin high producing strain	31.737
DRR006526	Leaf Summer glycyrrhizin high producing strain	32.196

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	61.376
SRR2868004	Drought Stress (root)	86.898
SRR2967015	Control (root)	66.070

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	96.756
SRR9715740	Leaf	51.571
SRR9715741	Leaf	123.580
SRR9715739	Root	21.275
SRR9715742	Root	54.530
SRR9715743	Root	48.064

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	66.768
SRR8749028	MeJA induced 9h	104.900
SRR8749029	MeJA induced 9h	99.704
SRR8749030	Uninduced	170.608
SRR8749031	Uninduced	310.945
SRR8749032	Uninduced	159.527

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	46.681
SRR8400027	Control - Root	44.507