Gene detail information of Glyur001003s00035747 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G44000.1 | 3.00E-71 | |
| NR | XP_003526660.1 | 1.97E-148 | PREDICTED: uncharacterized protein LOC100795181 [Glycine max] |
| Swissprot | tr|Q94AQ9|SGRL_ARATH | 1.00E-87 | Protein STAY-GREEN LIKE, chloroplastic (Precursor) |
| trEMBL | tr|I1KAG5|I1KAG5_SOYBN | 7.00E-149 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G12550.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01003 | 73414 | 78017 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001003s00035747.1 | PF12638.2 | Staygreen | 70 | 219 | 2.40E-55 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.053 |
| SRR1811619 | moderate drought stress | 0.073 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.199 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.155 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.106 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.106 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 44.658 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 43.913 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.328 |
| SRR2868004 | Drought Stress (root) | 7.322 |
| SRR2967015 | Control (root) | 5.122 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 54.571 |
| SRR9715740 | Leaf | 51.206 |
| SRR9715741 | Leaf | 54.444 |
| SRR9715739 | Root | 0.048 |
| SRR9715742 | Root | 0.405 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.518 |
| SRR8749028 | MeJA induced 9h | 0.293 |
| SRR8749029 | MeJA induced 9h | 1.206 |
| SRR8749030 | Uninduced | 0.154 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 1.272 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.253 |
| SRR8400027 | Control - Root | 2.603 |