Gene detail information of Glyur001003s00035746 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G34300.2 | 0 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
| NR | XP_006578949.1 | 0 | PREDICTED: probable methyltransferase PMT26-like isoform X1 [Glycine max] |
| COG | YP_004333894.1 | 7.00E-06 | type 11 methyltransferase [Pseudonocardia dioxanivorans CB1190] |
| Swissprot | tr|Q0WT31|PMTP_ARATH | 0 | Probable methyltransferase PMT25 |
| trEMBL | tr|I1JZ02|I1JZ02_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G42270.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01003 | 32175 | 38547 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001003s00035746.1 | PF03141.11 | Methyltransf_29 | 308 | 665 | 1.90E-145 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.613 |
| SRR1783600 | control | 9.778 |
| SRR1783602 | moderate drought stress | 10.462 |
| SRR1811619 | moderate drought stress | 10.483 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.106 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 9.870 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.675 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.754 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.615 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.531 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.523 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.367 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 37.572 |
| SRR2868004 | Drought Stress (root) | 34.089 |
| SRR2967015 | Control (root) | 32.032 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 8.560 |
| SRR9715740 | Leaf | 11.010 |
| SRR9715741 | Leaf | 10.905 |
| SRR9715739 | Root | 3.710 |
| SRR9715742 | Root | 10.298 |
| SRR9715743 | Root | 10.590 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 30.392 |
| SRR8749028 | MeJA induced 9h | 48.541 |
| SRR8749029 | MeJA induced 9h | 23.224 |
| SRR8749030 | Uninduced | 9.623 |
| SRR8749031 | Uninduced | 7.042 |
| SRR8749032 | Uninduced | 5.408 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 36.347 |
| SRR8400027 | Control - Root | 47.141 |