Gene detail

Gene detail information of Glyur001001s00027989.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G18200.1	2.00E-113	UTP:galactose-1-phosphate uridylyltransferases;ribose-5-phosphate adenylyltransferases
NR	XP_007151847.1	0	hypothetical protein PHAVU_004G080400g [Phaseolus vulgaris]
COG	YP_002941606.1	2.00E-75	galactose-1-phosphate uridylyltransferase [Kosmotoga olearia TBF 19.5.1]
Swissprot	tr\|Q9FK51\|AGLUP_ARATH	4.00E-152	ADP-glucose phosphorylase
trEMBL	tr\|V7C4K9\|V7C4K9_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW23841.1}

Sequence

Transcript Sequence

>Glyur001001s00027989.1
ATGGCATCTACTTCCTCAGGAAATCGAAACCCACAACTGAGGAAAGACGCAGTGTGGAATCGCTGGGTGATATTCTCACCCGCCAGAGCCAAACGACCCTCCGATTTCAAATCCAAATCCCCATCCGACCCGAACCCGAACACCATCTGTCCCTTCTGCATCGGCCACGAGCACGAGTGCGCACCCGAGATCTTCCGGGTCCCACCCGATGGACCCGATTGGAAGATCCGNGTCATCCAGAACCTCTACCCCGCTCTCTCACGCGACCTCCCTGACCCCCCGGTNCAGGAACCTCCCGGTTCGGTCCTCGACGGGTTCGGGTTCCACGATGTGGTCATCGAAACCCCGGTTCACTCGGCTCAGCTGACCGATTTGTCCCCGGAACAAATTGGAGAGGTCTTCGTTGCTCACACCAACAGAATCCAACAGCTCGCCAACCCTGGTGCATCAATGAGCCATTCTCATAGTCAAATGCTGGCNCTGCCAATTATTCCACCTAGTGTCTCTGCACGTCTTGGAAGCGTGAAGGATTTTTTTGATCAGACAGGGAAATGTTGTATTTGTNAAATTCAACGCGAGGATCTTCTGATTGATTCGTCTACCTACTTNTTTTCATTGGTTCCTTTTGCTGCTACATTTCCTTTTGAGATATGGATTGTTCCCCAGTATCACTCTGCTCATTTCCATGACTTGGATGCTGAAAAGGCAGTTGATCTTGGAGGTTTGTTGAAACAAATGCTTAGGAAGATGTCTTTGCAGTTGAACAATCCACCGTTCAACTTTATGATTCACACTAGTCCACTGCATGCCAATGAGTCAGAGTTGGCATACGCTCATTGGTTTATACAGATAGTACCTCAACTAATCGGGGTAGCGGGTTTTGAGCTTGGAACTGGGTGTTACATAAATCCTGTTTTCCCCGAGGATGCTGCAAAGGTTCTAAGAGAAGTGAATGTTGCAGAGTCAGGACAAGAAAGGTAGAAACATAACTGGTAACCTAATCTCAAACTTGTAAGCTGATACAGATTTTTCTTCAGATATTTGCTTCANTTTGTATGATAAGGGTCTCTTCGTGCCAGCTTAGGCGCCACGGCGCGTTGCGAGACTAAGTCCCTCTTTAGGTGCATTTGAGAGAATTGATTCTCCTGAGTTCTGGCCCAAGGTTTGAAACAAAGTAATAAAGTGGATAACACACACCCCTTAGCTATTTATACTTGTAGTTATAATAGTATCTTGATTGAAATATGGAGGATCGTTTTGAGAAGAGATTGGAGTTGAGTCTTATAAATAAGAAGTTAGAGCTAGTGTTGTTGAATTTGCTATCTTTTTTTGCTCTAATTTTAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01001	79877	84727	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00965	galT, GALT	EC:2.7.7.12	Galactose metabolism	map00052
			Amino sugar and nucleotide sugar metabolism	map00520
			Prolactin signaling pathway	map04917

Gene Ontology

biological_process
GO:0006012 galactose metabolic process

molecular_function

GO:0003824 catalytic activity

GO:0008108 UDP-glucose:hexose-1-phosphate uridylyltransferase activity

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001001s00027989.1	PF01087.17	GalP_UDP_transf	10	165	3.50E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	67.556
SRR1783600	control	67.755
SRR1783602	moderate drought stress	82.077
SRR1811619	moderate drought stress	81.589

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	68.309
DRR006520	Root Summer glycyrrhizin high producing strain	68.448
DRR006521	Root Winter glycyrrhizin high producing strain	82.832
DRR006522	Root Winter glycyrrhizin high producing strain	80.251
DRR006523	Root Summer glycyrrhizin low producing strain	74.833
DRR006524	Root Summer glycyrrhizin low producing strain	74.852
DRR006525	Leaf Summer glycyrrhizin high producing strain	29.143
DRR006526	Leaf Summer glycyrrhizin high producing strain	30.366

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	37.132
SRR2868004	Drought Stress (root)	40.513
SRR2967015	Control (root)	41.268

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	56.941
SRR9715740	Leaf	61.913
SRR9715741	Leaf	66.586
SRR9715739	Root	39.698
SRR9715742	Root	52.375
SRR9715743	Root	48.952

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	36.910
SRR8749028	MeJA induced 9h	49.744
SRR8749029	MeJA induced 9h	36.304
SRR8749030	Uninduced	51.292
SRR8749031	Uninduced	33.255
SRR8749032	Uninduced	41.395

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	43.980
SRR8400027	Control - Root	36.864