Gene detail information of Glyur001001s00027985 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G03960.1 | 0 | TCP-1/cpn60 chaperonin family protein |
| NR | XP_003548057.1 | 0 | PREDICTED: T-complex protein 1 subunit theta-like [Glycine max] |
| COG | YP_003669183.1 | 5.00E-74 | thermosome [Staphylothermus hellenicus DSM 12710] |
| Swissprot | tr|Q94K05|TCPQ_ARATH | 0 | T-complex protein 1 subunit theta {ECO:0000303|PubMed:11599560} |
| trEMBL | tr|I1MNU1|I1MNU1_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA16G26920.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01001 | 62472 | 69185 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001001s00027985.1 | PF00118.19 | Cpn60_TCP1 | 38 | 309 | 3.50E-68 |
| Glyur001001s00027985.1 | PF00118.19 | Cpn60_TCP1 | 324 | 471 | 1.00E-38 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 45.919 |
| SRR1783600 | control | 46.134 |
| SRR1783602 | moderate drought stress | 35.757 |
| SRR1811619 | moderate drought stress | 36.709 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 98.223 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 98.610 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 53.894 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 52.760 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 68.303 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 68.395 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 21.051 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 20.601 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 122.902 |
| SRR2868004 | Drought Stress (root) | 81.707 |
| SRR2967015 | Control (root) | 79.749 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 48.491 |
| SRR9715740 | Leaf | 53.887 |
| SRR9715741 | Leaf | 52.509 |
| SRR9715739 | Root | 35.857 |
| SRR9715742 | Root | 79.938 |
| SRR9715743 | Root | 70.477 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 50.224 |
| SRR8749028 | MeJA induced 9h | 41.275 |
| SRR8749029 | MeJA induced 9h | 25.378 |
| SRR8749030 | Uninduced | 16.637 |
| SRR8749031 | Uninduced | 7.289 |
| SRR8749032 | Uninduced | 9.194 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 103.246 |
| SRR8400027 | Control - Root | 96.841 |