Gene detail

Gene detail information of Glyur001001s00027983

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G55370.2	3.00E-55	NDH-dependent cyclic electron flow 5
NR	XP_004508669.1	0	PREDICTED: uncharacterized protein LOC101512349 [Cicer arietinum]
trEMBL	tr\|G7KQ57\|G7KQ57_MEDTR	0	NDH-dependent cyclic electron flow protein, putative {ECO:0000313\|EMBL:AES75230.1}

Sequence

Transcript Sequence

>Glyur001001s00027983.1
CCTTATCCACTTAAATAGACCAATTTCAAATCAAAACCAAAATAAGAGGATGAAAAAAAATTCCCCTTCCTCCTTAATAGTAAGACCCCATTTGGTATGAAGCATAACCATGGCTTCAAGTTCAATTTTTTGCTCCACTCACTTCATTAGAAGCATACCCTCTTCACACATTTGTTTACCTTCTTCTGTTAGTTATGTTCAACAACACAACCACTGCAAGAAGAGAGAGTTTCCACTCCCATCAGTGGCTTCAGTCTCTTCTTACCAACCCATCAACATTGATTACTTGGAAGAAGAATTCAATGGACATGGAGTCACATTTGAGGGAGTTGGTGGTGGAAGCAACAGCTACATAGCCAAGATGGAANTGAGAAATGGAAGCATTGCAAACATGTTGCTTCCAAGTGGGTTGATAACTTCCTATAAGGCACCTATGTGGCATGGTGGCAAAGTGGAGTTGCTCCATACAGCAGTGTCAGAGGGAGAAGAATATGGTGATGCCATTATTCAAGGAGGGGTGTCTTTGAACTTCAGTTTTCAAAGTGATGATGGTGGTGAAGAAGTTTCTTGGTCTCCAACTAATTGGGTTCTGCATAATATTAAAGGCAATTCTGAGGATTCCATTCAGGTAGAATTAATAAACAAAGCACCAGAGAACAAGATTGGATTAAAATACACTGTGACTTTGGAAAAAGATGGCTTAAGCTCAGAGCTTGAAATCTCAAACTCAAAGTCTTTGCCCCTTCAGATGACAGGGTCCATCCTGAGTCATCTGACAGTAAGCACACCAGAAGCAACCTATGCAATAGGANTAGAAAGATCAAGTTACTATAGCATGCCCCCTTTTGAATCAGAATTCATTTTGAGTCCNCCAAATTCAGGCTTAGATGAAGGCCTTGGAAAAAAATGGGCATCATCTCTTAAGCAACTTTTTCCTAGGTGGGGTACAAAAAATCAGAACAATGAAGCAGAAGGAAGCCAAAGAGATAGTGAAGATATGAATGGTGAAGAAATGGACAGCTACAAGCATTTAAGAGAGAGAATAAGTCTTGTATACACAGATGCACCTCGAAGTTTTACATTGATTGACAGGGGTAGAAGAAACTCNGTGTCAGTTGGAAGGAATGGATTTGAAGAAACCTACCTCTTCAGTCCTGGCTCAAGCATTGAAAGTTACAGCAAGTATGCTTACATATGTGTTGGCCAAGCTGCTGTCCTCCAACCAATAGTGTTAGGTCCTGAAGAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01001	58953	61674	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function

GO:0003824 catalytic activity

GO:0030246 carbohydrate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--	--

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.668
SRR1811619	moderate drought stress	0.669

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.348
DRR006520	Root Summer glycyrrhizin high producing strain	0.259
DRR006521	Root Winter glycyrrhizin high producing strain	1.529
DRR006522	Root Winter glycyrrhizin high producing strain	1.522
DRR006523	Root Summer glycyrrhizin low producing strain	0.266
DRR006524	Root Summer glycyrrhizin low producing strain	0.264
DRR006525	Leaf Summer glycyrrhizin high producing strain	45.161
DRR006526	Leaf Summer glycyrrhizin high producing strain	45.036

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.438
SRR2868004	Drought Stress (root)	0.498
SRR2967015	Control (root)	0.253

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.094
SRR9715740	Leaf	9.985
SRR9715741	Leaf	6.357
SRR9715739	Root	0.000
SRR9715742	Root	0.050
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.049
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.041

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.144
SRR8400027	Control - Root	0.355