Gene detail

Gene detail information of Glyur001001s00027982

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G54385.2	1.00E-157	ARM repeat superfamily protein
NR	XP_004508667.1	0	PREDICTED: uncharacterized protein LOC101511812 isoform X1 [Cicer arietinum]
trEMBL	tr\|K7MHI2\|K7MHI2_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA16G26890.2}

Sequence

Transcript Sequence

>Glyur001001s00027982.1
TTCAAACACTGCTTTGCCTCTCTTTCTCTCTCTTTCTTCTAACATCTTCTACCACTCCACTCCACTGCACACTCTCTCTCTCTTGCTGTTCTTTGTTGCTACCTCAGTACCTCTCTTCCACCCCACCTTCAAGATCTTCATTTTCATTCCAACCCATATAAAAAGTTCAACAACAATGGGAAGGAATTTGAGTCCAGTGCTACGGCGAGAGCTTGAAAACCTTGACAAAGACGCGGATAGTCGCAAGTCTGCAATGAGAGCATTGAAGTCTTATGTGAAAGATTTGGACTATAAGACAATTCCCATCTTTCTTGCACAAGTTTCTGAGACCAAGGAAACTGGTACTTTGTCTGGGGAATTCACAATTTCATTGTATGAGGTTCTTGCTCGGGTTCACGGGGTCAAAATCGTTCCCATGATTGAGAGTATTATGCAATCCATAGTTCAGACATTAGCCTCAAGTGCAGGGTCTTTCCCTCTTCAGCAGGCTTGCTCAAAGGTGGTTCCAGCTGTAGCAAGATATGGAATTGACCCCACAACTCCAGAAGATAAGAAGAGGCAAATAATCCATTCTATTTGTAAGCCTCTTTCCGATTCCCTCACGAGTTCTCAAGAGAGTTTGAGTANCGGCGCGGCCCTTTGCTTGAAGGCTCTGGTGGATTCGGATAACTGGCGGTTTGCTTCTGATGAGATGGTCAACAGGGTTTGCCAGAATGTTGCTGTGGCCTTAGAGGGAAAGTCCACTCAGACCAATTCACACATGGGTCTGGTTATGGCATTGGCCAAGCGCAATGCGTTGATTGTCGAAGCCTATGCTAGATTGCTCATACAAATTGGGCTGCGGATACTAAGTGCTGGTGGAGAGCTTCTGGAGGGGAATTCTCAGAAGCGGTTTGCGGCCATTCAAATGATGAACTTCTTGATGAAATGTTTAGATCCCAGGAGTATTTTCTCAGAGGTTGAAAAGGTAATTGAGGAGATGGAGCTGTGTCAATCAGACAAAATGGCATATGTCAAAGGTGCTGCATTTGAGGCTTTGCAAACAGCCAAGAAAATCGCGGCTGACAAAAAATCAAGATGNATGAAGAGTCCTGCTTCAGTGACAGGGTCAAATTTTAGTAGCAGGAGAGACTATATGGAGGGAGGAAGTTCTTCTGGTGATGGAGACCATTCTTCCAGATCTATTTCACCAGAGTCGCGTACCTTGGATTTTTTCCCNGGGTATGAATCGCTTAATGAGTCTCCCATTTCAACGTGTCAGTCTTCTCAGAACTTCAACTATGAGCGGAGGAGTGTGAATAGGAAGCTTTGGAGTCATGAAAATGGAGGGGTTGATGTGTCTCTCAAGGATGGTTTGTTCTCNAAGGCAGGGGTGGGGGAGAACACTCTGGATGATCACCAGTTTTCCAATGGAGGGGGAGATTTAACAGAGGAATTTNCTGGTTTCATGCACAGAAATCCTAGGCATGGAGCATCCAAAAGTACCAACACGAGTCCCCTAAGATCGCGCACNCCGGTTAATGTTGACAGTATTAGAATCTTTACCACCCCAAGGAAGCTCATTCACTCTCTTCAAGACTCTAGCGATGAGACTTCGGATTCCTCTGGAAAACTGAATAGAAGATTTAGGAGTCTATCATCAGGCAACATTGAGTGGAGCCCATCATCTTATTCNAAATATGATCAGAATGGTATCATCACAGATCATGTCAACTATGATTGTAAAGAGAACAGAAGCTCGTGCGGCGATGATGTTCAGTTCCAAGGTGGACCGGAGTCAGTCTCATCAACAGATGACCTTCCTGGTGATGCTGATATGCAGCAGATGCCTTCTTCTGAGGTGGTTCCTGAATGTAGAAATGATCCTCAAACTGTTCTTGTGGAAAAACCGCTTCAAAAGGCTAAGCGCAGACTGGTTTGTGGCCTTTCTTTTGTTGTTGTTGCAATGGCTACACCTTTACTCTGGATCAACAGTCAGGAAGAAGGCCATTTTCTTGTCCCAACATAATGTGCTCCTCCTTCTAGTGTACAAGCTGAGAATTAAGAGACATTATAGATATGGTTCTGTGAAAGTAATTAGTCATATTCCAACTAAATGTTGGGAGGTTCAGTGTAGAAGTAGAATGANTATCAGTAAAATTTAGCACCTTCAATGTGCTTCTGTTTTTTTNCCCCCTTTAAATAGTCTGTAAGAACCTTTGACTGAATTCTACCTTCTGGTGGAGTGGAAACACAAAAAGCCGTATTTGGAATTTGATGGATCATTACATTATG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01001	54457	58073	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0000387 spliceosomal snRNP assembly

GO:0000398 mRNA splicing, via spliceosome

cellular_component
GO:0005681 spliceosomal complex

molecular_function
GO:0005488 binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--	--

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.800
SRR1783600	control	3.747
SRR1783602	moderate drought stress	2.270
SRR1811619	moderate drought stress	2.162

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.741
DRR006520	Root Summer glycyrrhizin high producing strain	2.789
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.873
DRR006524	Root Summer glycyrrhizin low producing strain	0.875
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.697
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.665

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.648
SRR2868004	Drought Stress (root)	4.952
SRR2967015	Control (root)	6.320

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.230
SRR9715740	Leaf	0.055
SRR9715741	Leaf	0.498
SRR9715739	Root	2.022
SRR9715742	Root	2.075
SRR9715743	Root	1.556

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.978
SRR8749028	MeJA induced 9h	8.814
SRR8749029	MeJA induced 9h	4.987
SRR8749030	Uninduced	0.392
SRR8749031	Uninduced	0.082
SRR8749032	Uninduced	0.363

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.800
SRR8400027	Control - Root	6.758