Gene detail

Gene detail information of Glyur001001s00027978

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G64760.2	3.00E-174	O-Glycosyl hydrolases family 17 protein
NR	KHN00669.1	0	Glucan endo-1,3-beta-glucosidase 8 [Glycine soja]
Swissprot	tr\|Q6NKW9\|E138_ARATH	0	Glucan endo-1,3-beta-glucosidase 8 (Precursor)
trEMBL	tr\|I1MNT6\|I1MNT6_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA16G26860.1}

Sequence

Transcript Sequence

>Glyur001001s00027978.1
ATGGGTGGTTGTGAGGAAGGGGTAGGGGTGAATTGGGGGACACAAGCGACGCACCCGTTGAGGCCAGACACGGTGGTGGAGATGATGAAGGAGAATGGGATAAGGAAGGTGAAGCTGTTCGATGCNGATGAAGAGTGCATGAGTGCACTGAGTGGGTCAGGGATTGAAGTCATGGTTGCTATTCCCAATGACCAGCTCGCTGAGATGACTGACTATGNTCGTGCCATGCAGTATGTAGCAGTTGGGAATGAGCCATTTCTGAAATCCTACAACAACTCATTCTTGAATGTGACCCTCCCAGCACTACAGAACATTCAGAATGCCCTCAATCAAGCTGGTCATGGAGACACAGTAAAAGCCACAGTACCCTTAAATGCTGATGTATATGAGTCACCAGATTTGAACAATGCAGTTCCATCAGCAGGAATATTCAGGCCTGACATAAGTGGTCTCATGACCCAAATAGTCCAATTTCTAAACAAGAATTCAGCACCATTCATAGTTAACATTTACCCCTTTTTAAGTCTTTATGGGAATGACAACTTCCCTTTTGACTATGCTTTCTTTGATGGGGTATCCANTCCTATAAATGATAATGGGGTTTTATATACCAATGTTTTTGATGCAAATTTTGANACTTTAGTCTCTGCCCTTAAAGCTGTAGGATTTGGGGACATGCCCATTTTGGTAGGTGAAGTTGGGTGGCCAACAGATGGTGACAAAATTGCAAATATTGGTAATGCATTAAGGTTCTACAATGGTCTTTTACCTAGGCTTGCAGCAAATAAAGGAACCCCAAGAAGACCAGGGTACATTGAAGTTTATCTATTTGGTCTTATTGATGAAGATGCTAAGAGTATTGCCCCTGGAAATTTTGAGAGACATTGGGGAATTTTTGAGTATGATGGGAAGCCAAAGTTTCCAATGGATCTTTCTGGTAAGGGTCAAAAGGTGTTACCAATTGGTGCAAAGAATNTGCACTATCTTGACCCTAAGTGGTGCGTGTTTGATCCAAATGCTGGGGATTTGGGTAAGCTTGTAGATAATATAGGTTATGCTTGCACCTATGCTGATTGCACTGCACTTGGGTATGGATCTTCTTGCAATAATTTGGATGCTAATGGGAATGCCTCATATGCATTTAATATGTATTATCAGGCACAGGATCAGAATGACATGGCTTGCAATTTTGATGGGTTGGCTAAGGTTACCACAAACAACATCTCAACACCTACTTGCAATTTTATTATTCAGATAAACCCTTCTTCATCCTCTTCTTTGATGGTGGATTTCTTTTTTGTTACACTAGTACCCTTGATTCTGTTTTTGTAGGTTCTTCTTGNACACACAATATTGTAGGTGCTACTATTATTTATTTATATATTTTCATCTCAGATCTTGTACTTGGTGATAGTATGGAAGATATAGTTTGAAGATTCATTTAATGAATGAATAATTTTATAGACTTGAATATTGTATCCCATATGATAAATGTATAACCACGAGGATGGACGCAAGTGGTTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01001	24108	29264	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH17,CBM43

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001001s00027978.1	PF00332.13	Glyco_hydro_17	8	310	4.40E-61
Glyur001001s00027978.1	PF07983.8	X8	332	401	3.00E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.526
SRR1783600	control	2.519
SRR1783602	moderate drought stress	3.535
SRR1811619	moderate drought stress	3.539

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.882
DRR006520	Root Summer glycyrrhizin high producing strain	5.237
DRR006521	Root Winter glycyrrhizin high producing strain	39.317
DRR006522	Root Winter glycyrrhizin high producing strain	37.620
DRR006523	Root Summer glycyrrhizin low producing strain	8.704
DRR006524	Root Summer glycyrrhizin low producing strain	9.047
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.962
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.749

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	12.762
SRR2868004	Drought Stress (root)	9.243
SRR2967015	Control (root)	10.456

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.351
SRR9715740	Leaf	8.782
SRR9715741	Leaf	8.275
SRR9715739	Root	2.603
SRR9715742	Root	13.874
SRR9715743	Root	13.179

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.203
SRR8400027	Control - Root	4.511