Gene detail

Gene detail information of Glyur001000s00030117

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G48990.1	0	AMP-dependent synthetase and ligase family protein
NR	XP_003599555.1	0	2-succinylbenzoate-CoA ligase [Medicago truncatula]
COG	YP_001868078.1	1.00E-130	AMP-dependent synthetase and ligase [Nostoc punctiforme PCC 73102]
Swissprot	tr\|Q9SMT7\|4CLLA_ARATH	0	Oxalate--CoA ligase {ECO:0000305}
trEMBL	tr\|G7IZP1\|G7IZP1_MEDTR	0	Long-chain acyl-CoA synthetase {ECO:0000313\|EMBL:AES69806.1}

Sequence

Transcript Sequence

>Glyur001000s00030117.1
CAAGAACACAGGAATCACACGTGAATGCTTAAACCACACCCACGTCTCCCCCATACGCAAGTTATATAAAACCCGAAATCGCGAAACCCAAATTCTTCATTCGCACCTCACACTTCCATTTCACCATTTACATTGAAGAAAAAAACTCTCTTCCTTGTCCTTCATCGGAAGAACAATGGAAACCCCAATGACCCTCACCCCAATGACCCTCACGGGGTTGCTCCACCGCGTCGCCGAGAAATTCCCCTCCCGTCGTGCCATCTCCGTCGCCGGAAAACTCGACCTCACCCACTCCCGCCTCCACCAGCTGGTCGAACTTGCCGCCAACAACCTCGTCTCCGCCGGAATCAAGCCCCATGATGTTGTCGCCCTCACCTTCCCCAACACCGTCGAGTTTGTTATAATGTTTTTAGCCGTGATTCGTGTACGAGCAACAGCGGCGCCGTTAAACTCAGCATACACATCGGAAGAGTTCGAGTTTTATTTATCCGATTCAGACTCGAAGCTTCTACTAACGCCGTTAGACGGTAACAAACCGGCACAAGCCGCGGCTTCGAAGCTGAACATTCCATGCGGCTCGGCTTCACTCACAACACAAGCGGAAGGAGAAGAAAAAGAACCCACGCTGAGCGTCTCACTGAACCAGCCCAAGTCAGACTCGGTCAACTCGGTAGCCGGACTCAGTAACGAACCATCCGACGTGGCGCTGTTCCTCCACACCTCCGGCACGACGAGTCGCCCCAAGGGAGTGCCGCTGAGTCAGCACAATCTTCTTTCTTCCGTTTTTAACATCGAGTCGGTGTACCGACTCACCGAGTTGGACTCGACGGTGATCGTGCTCCCGCTGTTCCACGTGCACGGTTTAATCGCCGCGTTGCTGAGCTCGCTCGGCGCCGGAGCCGCCGTGGCGCTGCCGGCGGCGGGGAGGTTCTCAGCCTCGACGTTCTGGAAGGACATGGTAACCTACAACGCCACGTGGTACACCGCGGTTCCTACCATACACCAGATCATACTGGATCGCCACCTCAGCAAGCCCGAACCGGTTTACCCGAAACTCCGGTTTATCCGTAGCTGCAGCGCGTCGCTGGCACCGGTTATTCTGGGTCGGTTGGAGGAGGCATTCGGGGCACCGGTTTTGGAGGCATATGCGATGACGGAAGCGTCTCATCTCATGGCTTCGAACCCGTTGCCGCAGGATGGGCCCCACAAGCCCGGGTCAGTTGGGAAGCCCGTGGGCCAGGAGATGGCTGTGTTGGATGAAACGGGTCGGGTTTTGGAGGCTGAAGTTAATGGAGAGGTTTGTATTAGGGGACCTAATGTGACGAAGGGTTATAAGAACAATGTGGAGGCTAATACGACGGCGTTTCAGTTCGGTTGGTTTCATACTGGTGATATTGGGTACTTTGATTCTGATGGGTACTTGCATCTCGTNGGTCGGATCAAGGAACTCATAAACAGAGGAGGAGAGAAAATATCCCCAATAGAAGTGGACGCTGTCCTTCTATCACATCCAGACATTGCTCAAGCGGTTGCTTTTGGAGTGCCAGATGAGAAATATGGAGAAGAGATAAATTGTGCAATCATCCCAAGAGAAGGATCAAACATTGACGAGGCGGAGGTGCTAAGACATAGCAAGAAGAATCTTGCATCCTTTAAAGTCCCCAAAAAGGTCTTCATTACTGATTCTTTGCCTAAGACTGCCACTGGAAAGATTTTGCGCCGTCTTGTGGCAGAACACTTCATCTCTCAAACTTGAACTACAAGTCCCCAACTCAGGAAGCTTAAGATAAGGGTTGAAGGGCAACTTGGCATTTAAGAGGAATTTACTTTTGCAACTGGTCTTTCCCACATGATACAAATACAATAGGGATTTGGATTCCCTACGTTCACCCTTCTCTTTCTCTTTTTCACTTGTATTTTCCTTTATATTTATTGGACAAAATAAATTAATAGCTATGATTTTANATCCAGTAAAATCAATGGCTCAGATTGCACTGATTGCAGCGATTGCATGAAGCAGTGACAGCAGGCAATCCAGGTCCATACAATAGATGTATTTCACTATGCAATGTTTTTACATGTCCATCTTATAGAATCAACAATGATTTTTGAACACCTACATAATTCCATTCCCCCTCTCTTTCTCCCTATTTTTTTTACTGTCTCTTGTTTTCATATTATTCATATATAGTTGGTCTCTCTTCTATTTATGTCTTATAGTTGGGGTCTCTTATATTAGTCAATGTTGACAAATTCTTGTGAGCAGTTGAAGATTGCTTGTATATA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01000	26171	31909	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001000s00030117.1	PF00501.23	AMP-binding	17	428	2.30E-88
Glyur001000s00030117.1	PF13193.1	AMP-binding_C	437	512	5.20E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	17.368
SRR1783600	control	17.201
SRR1783602	moderate drought stress	12.788
SRR1811619	moderate drought stress	12.420

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.916
DRR006520	Root Summer glycyrrhizin high producing strain	5.799
DRR006521	Root Winter glycyrrhizin high producing strain	26.244
DRR006522	Root Winter glycyrrhizin high producing strain	25.261
DRR006523	Root Summer glycyrrhizin low producing strain	17.551
DRR006524	Root Summer glycyrrhizin low producing strain	17.124
DRR006525	Leaf Summer glycyrrhizin high producing strain	81.688
DRR006526	Leaf Summer glycyrrhizin high producing strain	81.287

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	92.379
SRR2868004	Drought Stress (root)	65.452
SRR2967015	Control (root)	67.963

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	91.140
SRR9715740	Leaf	61.534
SRR9715741	Leaf	90.758
SRR9715739	Root	23.318
SRR9715742	Root	36.183
SRR9715743	Root	30.844

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	103.236
SRR8749028	MeJA induced 9h	291.549
SRR8749029	MeJA induced 9h	253.865
SRR8749030	Uninduced	358.727
SRR8749031	Uninduced	794.888
SRR8749032	Uninduced	548.713

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	28.659
SRR8400027	Control - Root	25.499