Gene detail

Gene detail information of Glyur000999s00024103.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G64860.1	0	disproportionating enzyme
NR	KHN48378.1	0	4-alpha-glucanotransferase, chloroplastic/amyloplastic [Glycine soja]
COG	YP_003319332.1	1.00E-152	4-alpha-glucanotransferase [Sphaerobacter thermophilus DSM 20745]
Swissprot	tr\|Q06801\|DPEP_SOLTU	0	4-alpha-glucanotransferase, chloroplastic/amyloplastic (Precursor)
trEMBL	tr\|I1KBB6\|I1KBB6_SOYBN	0	4-alpha-glucanotransferase {ECO:0000256\|RuleBase:RU361207}

Sequence

Transcript Sequence

>Glyur000999s00024103.1
GTGCAGTTGCCGCTGATAAATGTCTAACAACGAATGATGTTATGAATAGAAAGCGACAAAGCAAGGCGGTACGTTGATTATTGTGGGGTTTGTCTCGGATCAAACAGTCACGACAGACTGGTTCATGTTCTTCCTCTCCTCACGTGTTTCCTGCGTCCACTCTACTCTTCACTCTCACTCTTGCTGAAAAAGAAGGAAAAAGAAAAAATCGTGTGCCTGGAAGGGAACTGCAAATAGTCATCAAAACTCAAGTAGACAGAGAAAGAGATGTCTCTCACTCTCAATAATCTCAGCATCTCAGTGTGTTGTCCACAAGCACAGCTACAACAACAACAACAGCGGTGGACCTCATCGCCCACTCTCAAATTCAAACCCAAATCCAAACCAACACTCTTCCTCACTCGTGCTTCTTCCTCTTCCGCTTCCGCTTCCGTTTCCTTAGCTGAACTCAGCGTCGGTGAAGATTTACCGTCAAACTACGGGGATTGGCTTCCGAAGACCGACCCTGACCTTCGCAGAAGAGCCGGTATTCTTCTCCATCCGACGTCGTTTCGAGGCCCCTATGGGATCGGCGATCTCGGTGACGAGGCCTTCCGTTTCATTGACTGGCTCCACCTCGCGGGTTGCTCCCTTTGGCAGGTTCTTCCTCTTGTGCCTCCTGGCAGAAAGGCTAATGAAGAGGGATCCCCTTACTCAGGCCAGGATGCCAATTGTGGCAACACCCTCTTGATCTCGCTTGAAGGGCTTGTTGAGGATGGTTTGTTGGAAAAACACGAGCTTCCCAAACCAATTGATGCAGAGCGCGTGGATTTTTCGGTTGTTGCTGACCTTAAGGATCCTTTGATAACCAAAGCTGCAGAGAGGCTCATTTCAAGCAAAGGGGAGCTCAAAACACAGCTTGAGAATTTTCGTAGAGATCCTAACATATCAAGCTGGCTTGAAGATGCAGCTTATTTTTCTGCTATTGACGACAGTTTAAACACACTCAGCTGGTACGAGTGGCCCGAACCTTTAAGAAACCGCCATCTTGTAGCTCTAGAAGATATTTACCAACAAAAGCAAGATTTTATAAATGTATTTATTGCCCAACAGTTNTTGTTCCAAAGGCAATGGCAGAAAGTTCGCAACTATGCACAGAGTAGAGGCATCAAGATAATGGGAGACATGCCCATTTATGTTGGTTATCATAGTGCAGATGTTTGGGCAAATAAGAACCAATTTTTACTGAACAGGAAAGGCTTTCCTCTTTTAGTTAGTGGTGTTCCACCTGATTTCTTCAGTGAAACTGGTCAGCTGTGGGGCAGCCCTCTGTATGATTGGAAAGCCATGGAGAAAGAAGGATACTCATGGTGGATACGTCGCATACGACGTGCACAGAATTTATATGACGAATTTAGGATAGACCACTTTAGAGGATTGGCTGGATTTTGGGCTGTTCCGTCTGAAGCAAAAGTAGCCATGGTTGGAAAGTGGAAGGTAGGACCTGGATTATCCTTCTTTGATGCCCTTTTCAGAGCTGTTGGAAAGATTAATATTATAGCAGAAGACTTGGGAGTTATCACCNAGGATGTAGTGCAACTAAGAAAATCCATTGGAGCCCCTGGAATGGCTGTTCTCCAGTTTGGGTTTGGAGGTGGTGCTGATAATCCTCATTTGCCTCATAATCATGAGTGCAATCAAGTTGTCTATACCGGGACTCATGACAACGATACAGTTAAAGGTTGGTGGGAAGCTTTGAACGAAGAAGAGAAATCCAATGTATTAAGTTATCTTTCATTAACCAGAGAAGATGACATTTCATGGGCACTGATCCAGAAGGTACTGGCTTCTGTTGCTCAAACTGCAGTCATACCCATGCAAGATGTTCTTGGACTGGGGAATTCTGCCAGGATGAATATTCCTGCAACTCAGTTTGGAAACTGGGGATGGAGGATTTCAAGTTCTGTGAGCTTTGATAGCCTAGAGAGAGAGGCAGCCAGACTTAAAGAGATGCTTTCAATGTATGGCCGGCTTTGAATATGGAATCCATTTTTGAGTGTAAAGTAGAAGAGTNATGCTTTGCAATGGCAGCTTAAGTGGAGAATGCTGAGCCTAAGTGTTTGTTCCCAAGTTGCTGGAGTAAGCATGATCTCGTGATCAATCAAAGCTGGGTGCCTCGCGTTGTTCAAGAAATTTGAGAAAGTGGGATATGCCTTTGTGAAAAGTTGTAATNGTACTGCAAATTTGTAGGGCTTGCCTGTATCATTGACCCCTGGTGATCTGACACCATCACCTGAACCATTTAGGTGACATAAAGGAGCAACTTTGCAATGCCCAGAAAATTTNAATGCTGAAAGTTCAGAATAAATTTGTAATGATATGCATGATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00999	87495	93418	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH77

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00705	malQ	EC:2.4.1.25	Starch and sucrose metabolism	map00500

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function
GO:0004134 4-alpha-glucanotransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000999s00024103.1	PF02446.12	Glyco_hydro_77	90	574	5.20E-151

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	58.048
SRR1783600	control	58.612
SRR1783602	moderate drought stress	41.159
SRR1811619	moderate drought stress	40.423

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	73.509
DRR006520	Root Summer glycyrrhizin high producing strain	72.260
DRR006521	Root Winter glycyrrhizin high producing strain	12.584
DRR006522	Root Winter glycyrrhizin high producing strain	12.277
DRR006523	Root Summer glycyrrhizin low producing strain	40.018
DRR006524	Root Summer glycyrrhizin low producing strain	39.755
DRR006525	Leaf Summer glycyrrhizin high producing strain	21.886
DRR006526	Leaf Summer glycyrrhizin high producing strain	21.344

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	42.099
SRR2868004	Drought Stress (root)	30.270
SRR2967015	Control (root)	30.936

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	18.118
SRR9715740	Leaf	20.970
SRR9715741	Leaf	19.948
SRR9715739	Root	25.040
SRR9715742	Root	49.971
SRR9715743	Root	44.206

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.173
SRR8749028	MeJA induced 9h	9.524
SRR8749029	MeJA induced 9h	6.447
SRR8749030	Uninduced	1.634
SRR8749031	Uninduced	0.684
SRR8749032	Uninduced	1.145

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	73.556
SRR8400027	Control - Root	68.220