Gene detail

Gene detail information of Glyur000999s00024102

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G21950.1	1.00E-95	SKP1 interacting partner 6
NR	XP_004502867.1	0	PREDICTED: F-box/kelch-repeat protein SKIP6-like [Cicer arietinum]
COG	YP_004788789.1	1.00E-10	PKD domain-containing protein [Muricauda ruestringensis DSM 13258]
Swissprot	tr\|Q9SJ04\|SKIP6_ARATH	1.00E-122	F-box/kelch-repeat protein SKIP6
trEMBL	tr\|G7JAA2\|G7JAA2_MEDTR	3.00E-174	SKP1 interacting partner 6 {ECO:0000313\|EMBL:AES72734.1}

Sequence

Transcript Sequence

>Glyur000999s00024102.1
ATGTCGTCCTCAGAAGTAGAAGNAGAAGCAGAAGCAGGTGTCAACAATAANAACAACAACCACTTGATCCCGTCCCTTCCAGATGACGTTGCAGTGAACTGCCTAGCACGTGTCCATCGCTCCGAACATGGAACCCTCTCCCTCGTTTCCAAACCAATCCGCTCTCTCCTCTGTTCCTCACTCTTCTTCAACGCCCGCTCCCTCCTCCACTGCACCCAGCACCTCCTCTACCTCACGCTCCGCACACGCGCCTCCTCCCTCCAATGGTTCACCCTCCACCACAACCGCCTCCTCCTCCCCGTCCCTCCCCTNCCCTCCCCCGCAATTGGCTCCGCCTACGCCGTCCTCGGATCCACCATCTACGTCATCGGCGGCTCCATCAACGACATCCCCTCCCGCCAAGTCTGGCTCCTCGACTGCCGTTTCCACCGCTGGCTCCAAGGCCCCTCCATGCGCGTCTCCCGCGAGTTCGCCGCTGCCGGCGTCGTCGACGGTAAGATCTACGTCATCGGCGGCTGTGTCCCCGACACCTTTGCCAGGTCCGCCAACTGGGCCGAATTCCTCGACCCCGCCGCCGGCCGCTGGGAGAGGGTCCCAAGCCCACCCGAGATCCGGGAGAAGTGGATGCACGCCAGCGCCGTCNTGGACGACAGGGTCTACGCCATGGCCGACCGAGGCGGCGTTGCGTTCGACCCGCGGAGCGGCGCGTGGGAGAGCGTGGGGACCGAGCTCGACCTCGGGTGGCGGGGGAGGGCATGCGTGGTGGACGGGGTTCTGTATTGCTACGATTACTTGGGGAACATTAAAGGCTTCGATGTGAAGCGAGGATTGTGGAAGGAGTTGAAGGGTTTGTACTGTTTGCCGAGGTTTCTGTGCGGTGCCACTATGGCTGATGTTGGTGGGAAGTTGGTTGTCGTTTGGGAGTGTGGAAATGGGAAAGAAATGGAGATTTGGGGCGCTGAGATTGAGGTGAACAAGAATGAGGATGATGGGGAATTGTGGGGTGAAGTTGGTCACCTGTTTATATCAACACTTGTCCTGCAAGATCGAGATCTTGAAACATCTCATGATTTTGCATTAAATTGCTGCTACTTGGTCTCTGCAAATTCCTTCTAGTTTGATCAGGTGAATTTATGGCTCCAATGATGTATGAATAAACAGGAGCTGCTCAAATAGTAGGGCATCTTTAGTCTTTACAACTGTATAGTTAGCCTGTATAGTTTCTCACACTTTCATGGTTCTGCTGTGCCATATTCCCCTTGTGTTTGTGTTTTGTATCTGGGTGAATTTGTAAGTTGCACATAGTTGGTACTAAATCCCGCACCCAATAAGTTAAGTTAGTTTCGGGGTTTATATCATTCCACGTTTACATGGTTATTCTCGTCTTGAGAAAGTTGAGGCTTAACTCATTCGGACAAAATGGTCGTGGAAAACGTGAGCTTAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00999	84319	86682	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000999s00024102.1	PF01344.20	Kelch_1	111	152	1.40E-07
Glyur000999s00024102.1	PF01344.20	Kelch_1	156	202	7.40E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	23.553
SRR1783600	control	23.537
SRR1783602	moderate drought stress	21.864
SRR1811619	moderate drought stress	21.248

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	20.274
DRR006520	Root Summer glycyrrhizin high producing strain	19.617
DRR006521	Root Winter glycyrrhizin high producing strain	14.313
DRR006522	Root Winter glycyrrhizin high producing strain	13.979
DRR006523	Root Summer glycyrrhizin low producing strain	17.981
DRR006524	Root Summer glycyrrhizin low producing strain	17.864
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.477
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.554

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	26.471
SRR2868004	Drought Stress (root)	31.037
SRR2967015	Control (root)	29.521

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.494
SRR9715740	Leaf	10.570
SRR9715741	Leaf	10.519
SRR9715739	Root	19.128
SRR9715742	Root	14.708
SRR9715743	Root	16.774

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.659
SRR8749028	MeJA induced 9h	7.613
SRR8749029	MeJA induced 9h	6.018
SRR8749030	Uninduced	2.905
SRR8749031	Uninduced	3.735
SRR8749032	Uninduced	3.282

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	28.925
SRR8400027	Control - Root	27.246