Gene detail

Gene detail information of Glyur000999s00024101.2

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G21940.3	3.00E-58	shikimate kinase 1
NR	AFK45491.1	4.21E-102	unknown [Lotus japonicus]
COG	YP_001657165.1	6.00E-34	shikimate kinase [Microcystis aeruginosa NIES-843]
Swissprot	tr\|Q00497\|SK_SOLLC	3.00E-71	Shikimate kinase, chloroplastic (Precursor)
trEMBL	tr\|I3SYZ9\|I3SYZ9_LOTJA	2.00E-102	Uncharacterized protein {ECO:0000313\|EMBL:AFK45491.1}

Sequence

Transcript Sequence

>Glyur000999s00024101.2
CTGAATATAAATCTAATAATTATTCAAAACACATATAATCCTGAAAATACAGTAATATAAACATTGTTTTAAAAAAGTAAAATCCTTATAAAAATAAATAAGTTTTTTTAGCTCGTTATTAAATTGTGTGGAGACTGGTGTATCAAAAAAAAATTTGTGTGGAGACTGGAGAGTGTAAAACATCTGCAAGACAACCCAAATCCGTTTCAGAAAAGNATTTTTAACCAGGTTAGTAATCTCTCTCTCTCTCTCTGTACAACCTTTCTCCAACTCCAGCCTCCAGGTAAGAAGTACGAGGTGAGATTTTAAGGTTTCGGAATTTCTCTCTGTTCTGTTACATTTCCTTTTCAACATATTTCAAACAAACTAACTCAAGTCAAAGTCATATTTGATGTGAGATATCCAATATTTTAATTTCCATATATCCCATTTGTTTTTAAGCTTCATTCTGGGTTTCACCCACTCCAATATTCCATATATTAAAGATATTCTGAAACTTTTTTCCCCCTTTTCATTTTAGCATTGATTGGGGTATCGGTGAATTCAGCAGCTGTTTTTGAAGTGAAGTGCCATCACTGCCATGGAAGCTAAAGCGGTTCAAAGTTTGCACTTTTCAACAATGGTGCATTGCGAGAAGCTTGGAAGAACAGGACCAAGGGGTTCTCTGAGAATGTATGGTGGTTCTATGGAGCCAAAGAAGCTTCAGGTTTTTGTTTCGCGTAGGTTGCAGCCCGCAAAACCTTCAACGAGGAGTTGGAGCAGGACGGTTCCTACGGAAGTTCCGTGTTCGTACAACAATGTTCCNGGAATGATGGGCTCTGGGAAGACAACTGTGGGGAAGATTTTGTCACAAGTGCTTTGTTATTCGTTTTTTGATAGTGATGCATTGGTGGAGGAGGAGGTTGATGGNATTTCTGTAGCTGATATATTCAGACACTATGGAGAGGCTTTTTTTCGTGACAAGGAGACCGAGGTACTGAGGAAGATGTCAATGATGCATAGACATGTTATTTCTACTGGTGGAGGTGCTGTTGTGAGGCCCATCAATTGGAAATATATGCGCCAGGGGATTAGTGTTTGGTTGGATGTACCTATAGAAGCCTTGGCTCAGAGAATAACAGCTGTTGGAACTAATTCTCGCCCACTTCTACATTATGACAAAGAAGATGCATATAAAGGGACTCTCAAGCGTTTGTCTGCTCTTTATGAAGAAAGAGGCGAAGCGTATGCCAATGCCATGCCAATGCCAACGCCAGGATATAGCAGCAAAACTAGGCCAAAGAGATATGTCGGGTCTATCTCCAACTGTTATCACAATAGAGACCTACTGATCTACGTTGGTATCATTGATACTTGTCTACATTGTGCCTGTGCGCTAGAACAAATCAAAGGCTTTCTAAAGGGTGAAGATGGCTGTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00999	79852	83488	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00891	E2.7.1.71, aroK, aroL	EC:2.7.1.71	Biosynthesis of amino acids	map01230
			Biosynthesis of amino acids	map01230
			Phenylalanine, tyrosine and tryptophan biosynthesis	map00400
			Phenylalanine, tyrosine and tryptophan biosynthesis	map00400

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000999s00024101.2	PF01202.17	SKI	78	211	3.30E-40

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.042
SRR1783600	control	1.085
SRR1783602	moderate drought stress	1.198
SRR1811619	moderate drought stress	1.211

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.774
DRR006520	Root Summer glycyrrhizin high producing strain	1.618
DRR006521	Root Winter glycyrrhizin high producing strain	0.223
DRR006522	Root Winter glycyrrhizin high producing strain	0.093
DRR006523	Root Summer glycyrrhizin low producing strain	0.200
DRR006524	Root Summer glycyrrhizin low producing strain	0.109
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.855
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.996

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.241
SRR2868004	Drought Stress (root)	2.364
SRR2967015	Control (root)	2.508

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.921
SRR9715740	Leaf	2.161
SRR9715741	Leaf	1.853
SRR9715739	Root	0.315
SRR9715742	Root	1.374
SRR9715743	Root	0.954

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.510
SRR8749028	MeJA induced 9h	2.808
SRR8749029	MeJA induced 9h	1.644
SRR8749030	Uninduced	7.517
SRR8749031	Uninduced	6.384
SRR8749032	Uninduced	4.245

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.306
SRR8400027	Control - Root	2.614