Gene detail

Gene detail information of Glyur000999s00024100

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G74060.1	4.00E-88	Ribosomal protein L6 family protein
NR	XP_004504017.1	6.02E-152	PREDICTED: 60S ribosomal protein L6-3-like isoform X2 [Cicer arietinum]
Swissprot	tr\|P34091\|RL6_MESCR	3.00E-130	60S ribosomal protein L6
trEMBL	tr\|G7J9R6\|G7J9R6_MEDTR	9.00E-146	60S ribosomal L6-like protein {ECO:0000313\|EMBL:AES72708.1}

Sequence

Transcript Sequence

>Glyur000999s00024100.1
ATGGAAGTGGAAGGGAAGGTAGGGTTTTTCGTGGCAGTGGTAGCAGCAGCAATGGCGCCGAAGCAGAGAAGAGCGAGAGTGAGCAGGAACCCCGAATTGATAAGGGGTATCGGAAAATACTCGAAGTCGCAGATGTACCACAAAAGGGGCATCTGGGCCATCAAGGCTAAAAACGGCGGCGTTTTACCTCGCCACGATCCCAAGCCTAAACCCGAAGCTCCCGCTGAGAAGCCCCCCAAGTTCTACCCTGCTGACGATGTCAAGAAGCCGATTCGCAACAAACACAAACCAAAACCCACTAAGCTCAGGGCTAGCATTACTCCCGGGACAGTGCTGATTCTTCTTGCCGGCAGATTTAAGGGCAAGAGAGTAGTGTTTCTGAAGCAGCTTCCTTCTGGGTTGCTTCTCGTAACTGGTCCTTTCAAGATTAACGGAGTTCCTTTGAGACGTGTTAATCAGTCTTATGTTATTGGCACTTCAACCNAAGTAGATGTTTCTGCAGTTAATGTNGATAAGTTTGATGACAAGTACTTCTCAAAGGAAGTCCAAAAGAAGAAAACAAAGGGAGAGGGCGAGTTCTTTGAGGCAGAGAAGGAGGAGAAAAATGTGCTCCCCCAGGAGAAGAAAGATGACCAAAAAACTGTTGATTCAGCTTTGCTAAAAGCCATTGAGAGTGTTCCAGAATTGAAGCCTTACCTAGGTGCCAGGTTTTCCTTGAAGGCAGGCATGAAGCCTCATGAGCTAGTCTTCTAGAGGAGAAACAAGAGTGTTAGAGAATTGTTTTTCCCCATATTCGGTTTTTTGTGTTGAACTTAGTCCTAAAGTTGTATTCATTTACTGATTTAGCAGCTCTTTCTTGGTAATAGACATCTGACGAACGTGTTTTTATGTTGTCAACTGATCGTTCCTGGGATTTTCCTTCCTTCAATTTTGCGCTCGTGTACTAGTTGATTTCATGATTATGAGGCTCTATTGTTGGCATACGACGGAACGAAGAATTGTTTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00999	74153	76136	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006412 translation

cellular_component

GO:0005622 intracellular

GO:0005840 ribosome

molecular_function
GO:0003735 structural constituent of ribosome

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000999s00024100.1	PF03868.10	Ribosomal_L6e_N	18	75	3.50E-22
Glyur000999s00024100.1	PF01159.14	Ribosomal_L6e	143	250	7.40E-40

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	325.314
SRR1783600	control	327.135
SRR1783602	moderate drought stress	239.060
SRR1811619	moderate drought stress	238.491

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	236.921
DRR006520	Root Summer glycyrrhizin high producing strain	237.079
DRR006521	Root Winter glycyrrhizin high producing strain	81.263
DRR006522	Root Winter glycyrrhizin high producing strain	79.240
DRR006523	Root Summer glycyrrhizin low producing strain	163.700
DRR006524	Root Summer glycyrrhizin low producing strain	165.885
DRR006525	Leaf Summer glycyrrhizin high producing strain	102.661
DRR006526	Leaf Summer glycyrrhizin high producing strain	103.249

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	482.544
SRR2868004	Drought Stress (root)	262.497
SRR2967015	Control (root)	231.964

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	143.892
SRR9715740	Leaf	110.844
SRR9715741	Leaf	100.869
SRR9715739	Root	125.969
SRR9715742	Root	145.432
SRR9715743	Root	142.948

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	539.841
SRR8749028	MeJA induced 9h	289.594
SRR8749029	MeJA induced 9h	359.988
SRR8749030	Uninduced	54.232
SRR8749031	Uninduced	19.736
SRR8749032	Uninduced	55.724

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	240.636
SRR8400027	Control - Root	210.774