Gene detail

Gene detail information of Glyur000999s00024099

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G39520.1	0	GTP-binding protein-related
NR	XP_006428021.1	0	hypothetical protein CICLE_v10025894mg [Citrus clementina]
COG	NP_619214.1	3.00E-115	GTP-binding protein [Methanosarcina acetivorans C2A]
Swissprot	tr\|Q9SVA6\|DRG3_ARATH	0	Developmentally-regulated G-protein 3
trEMBL	tr\|V4SVT0\|V4SVT0_9ROSI	0	Uncharacterized protein {ECO:0000313\|EMBL:ESR41261.1}

Sequence

Transcript Sequence

>Glyur000999s00024099.1
TTTGGGCCTACGCAATACGAAATGCCTTTGTTTGCTCATTTTCTCTTCGATTCGAGAGTCGAATACTCTACCCTAGGTCCCACCATAAGCATTCCTGCAACACATTTGTTCTAGCACCTTCTTCGCTCTCCTCTTTCCCCGGTGCAACACACCGCTGTAACAATTCACCACCGCAGAGTTGTCCNAGTCCAATCTCACCTCACTTCTCTCCAGGAGTAACTCTAAACCTCTTTTTGTGTTGCCTCCGAGTTTATCTCTCTTCAACAATGGCGACGGTGATGCAGAAAATCAAAGACATCGAAGATGAGATGGCAAGGACTCAAAAGAACAAGGCGACTGCTCATCATTTGGGCTTACTGAAGGCTAAACTTGCAAAGCTGCGGAGGGAACTCCTTACACCTACATCAAAGGGAGGTGGAGGTGCTGGTGAAGGTTTTGATGTTACTAAAAGTGGGGATTCAAGGGTTGGTCTTGTGGGCTTCCCTTCAGTTGGCAAATCTACTCTGCTAAATAAATTGACTGGGACATTTTCAGAGGTTGCTTCCTATGAGTTTACTACCTTAACTTGCATCCCAGGTGTGATCACATATCGTGGAGCTAAAATTCAGTTGCTGGATCTCCCTGGAATTATTGAGGGTGCCAAGGATGGAAAGGGTAGAGGAAGGCAGGTTATTAGTACTGCAAGGACATGCAATTGCATTTTAATTGTTCTTGATGCAATAAAGCCAATAACTCATAAGCGTCTTATAGAAAAAGAGCTAGAGGGATTTGGTATAAGGTTAAACAAAGAGCCACCAAACCTCACTTTCAGGAAGAAAGATAAGGGTGGAATCAATTTCACCTCAACTGCCACCAACACAAATCTGGATCTTGATACTGTGAAGGCTATATGTAGNGAATACAGAATTCACAATGCAGATATTACTCTCAGGTATGATGCCACCGCCGATGACCTTATAGATGTCATNGAGGGCAGTAGAGTATATATCCCTTGCATCTATGTTGTGAACAAGATTGATCAGATCACACTTGAGGAACTGGAGATCTTGGATAAGCTACCTCATTATTGCCCAATCAGTGCGCACCTGGAGTGGAACCTTGATGGGCTTTTGGAGAAAATTTGGGAATATCTCAACTTAACTCGTATTTATACTAAACCTAAAGGGATGAATCCTGACTATGAAGACCCTGTAATATTATCNTCTAAGAAGAGGACAGTGGAAGACTTCTGCACTCGCATTCACAAGGACATGCTTAAACAGTTTAAGTATGCTCTGGTCTGGGGTTCAAGTGCAAAACACAAGCCTCAAAGAGTTGGCAAGGAGCATGAACTTGAAGATGAAGATGTCGTTCAGATTATCAAGAAAGTATAAATTCGTCGTAGTCAAGACTTCTGAAACCNGATCACAATGCCTGCACAGAGGTANTAGAGGATGCTCAGAGCAGAATCAAAGATCTCTTAGTGAGCTTTTCTCCAAGGTTGTTAGATCACACTCCTATTACTAGTTTTGTATTCAGTTGGGGGTNAGGTGAAATGCAAGTTTGATGCGTAGTTGAACCATTTGTTGTCGAGGGATGCTGTTTTTGCATTATTTGGAAACGATGCGTCATGTGGGATTATATATATGTCTTAACAGTTTTGATGGGTGGAATAATCGGGGCTGTTCTTGTGAACACTAATAGGATTTACTGATATGTTGGTTTGCTGGATATAGTTAGATCACTGCTTGTGTTGCGATACAAATTAGATCTGCAAATCCATACTTATGTCGCTGAAACAAACAGAGGCAAACCAGAAAAATTGAGCTAATTATACCCTATTGCCATCTGGATTTGACGTGTTACAGTTGATTGGTCGGGGATATTTTCCCATTTCCTACTAGTTTGATTTGCTAAAATTAATCTTTGAAATCAAGCACTCTGCATTATGAATCTCTCGATGATGGTTTTGGTCTTGCTTATAAAATCTCTAGTGATTGCTAGCTACCTGAAGTACCCAAAAGATGCCATAAGAGCCATTAATACGGGTTTAGTCAATGCCCCGGCAAAAGTGGAACTGTATGGCTGGCAGGAGCAGCAAGCAAGAAAGCGCGTGGACACTGTGATGCTCATTACTTGCACAACTGAATTTCAGTAAAGCGGCCACAAGTGGTGGAGCTGAAATGTGTATATGGTCCAATAACCAGAGGAAAGACGTCTAACAAAACGAAACCGAGGTTTGGTTTGGAATCAACGAAACTTTGTCAGAATAACTAAACACGGTTCATTGTTGTCTTGGAACAACTTTAATGAATCACCTCTACAACGGTCAAGGAACGGAACCGCTAAAAGACAAATCCAACCTGATTTGTGAGTGTCCATAATTAACTAATTAAATTAGGAACAAAAGAAAAAGGAGATTTCATTGTCAAGAGCATTACTGTCCTGAATTGCCTCGTCATCATATTTTGGAGCTGGTGGTAAAGTTTTATCAGTCCTGGGCGGCATTTACATGTTTAAACATCTTTTACCTCTAATTAGATACAAAACATTTCAACAAAAATAACATAAAATAACCATTGAAGATAGGGGCTTAAAGAAGAGGTTCATTTTTCTAAATCAAGAAGAAGGGCAAAGTAATTATCACCAAGCGCTAAAACATAATTGTCCCACTCCACGATCTTCAGAAAGACAAGAAAAAGGTTGTGGATGCCCTTGAATATCAGGCTTTTACACAACAGTTGAAGTAGCTGAAGAAGCTCCTGCTTGTCTGTCATAGAAAAAAAATCAAACAAAAAAGTAATACTTCAGGCGCCACAAATATCGTAGTCCAATATTTTGTGCACACAAAAAATGAATATGATTCACAGTAAATTGAATATTCTATGTAACACTTCTAAGCTCCAACAGAGATTTTTTAATAAATAAATAAAATAAAATATTATACAAGCGATCACCATGTTTTATGGCCCTCTTACCAATGAAATGAATGTAATTGCCCCAGACATCCACTGCATGTGCAACAACTAAAATTGCGTGTTGCCTTTGTAAATAGTCATATCATAAAAATAACAATATACATCCTTCAACCTAACCACCGCCCTTACTTAAAAATAGCGAACCATGGGTTCCACAATAATAATCTAATTATAATNTATGATATCCCCTTTTCTCTTTGGATTTAAAATATGGTTTCCACAACAAGCTTCAGTCAAATAAGTAGACGACATATTAACCAGAGTTGAGATCTTTTTCATTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00999	64731	72936	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005525 GTP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000999s00024099.1	PF01926.18	MMR_HSR1	66	165	3.90E-19
Glyur000999s00024099.1	PF02824.16	TGS	293	366	1.30E-23

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	40.786
SRR1783600	control	41.360
SRR1783602	moderate drought stress	40.367
SRR1811619	moderate drought stress	40.115

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	57.768
DRR006520	Root Summer glycyrrhizin high producing strain	56.787
DRR006521	Root Winter glycyrrhizin high producing strain	58.349
DRR006522	Root Winter glycyrrhizin high producing strain	52.585
DRR006523	Root Summer glycyrrhizin low producing strain	83.348
DRR006524	Root Summer glycyrrhizin low producing strain	82.753
DRR006525	Leaf Summer glycyrrhizin high producing strain	16.765
DRR006526	Leaf Summer glycyrrhizin high producing strain	16.429

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	29.373
SRR2868004	Drought Stress (root)	23.438
SRR2967015	Control (root)	24.024

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	18.566
SRR9715740	Leaf	20.965
SRR9715741	Leaf	22.865
SRR9715739	Root	6.536
SRR9715742	Root	19.542
SRR9715743	Root	18.340

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	31.609
SRR8749028	MeJA induced 9h	46.952
SRR8749029	MeJA induced 9h	42.785
SRR8749030	Uninduced	91.055
SRR8749031	Uninduced	63.278
SRR8749032	Uninduced	41.131

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	25.928
SRR8400027	Control - Root	22.649