Gene detail

Gene detail information of Glyur000999s00024094

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G64840.1	general control non-repressible 5
NR	XP_003602495.1	ABC transporter F family member [Medicago truncatula]
COG	YP_007117938.1	ABC transporter related protein [Oscillatoria nigro-viridis PCC 7112]
Swissprot	tr\|Q9LV93\|AB5F_ARATH	ABC transporter F family member 5
trEMBL	tr\|G7JAB4\|G7JAB4_MEDTR	ABC transporter F family protein {ECO:0000313\|EMBL:AES72746.1}

Sequence

Transcript Sequence

>Glyur000999s00024094.1
ATGGACTTCACCGCGAAGCTTCATCACCTCGACCTCACCGGCGCCGTCATTTTACATGCACGAAAGCCCTCCACACAACAACCACGACCGTATCTTCTTCCACGCTACGCCGCGAGACCCAACAACATCAACAACACTCATTTAATTTACCCCAATCGATTATTCTCCGGCCCAAAAAGGCCCAATTATTCCCCTCCCCGTTTATCCGCGGTGGCCGTCGACGACAACACTTCGCTGGCCCAAGACGACATCGAGTCTCTCTTCTCCTCCGACCCTTCCGTCGATGAACGACAACGGGTCGCGAATAAGCCATCGAACACCGGCGCCTCGAGCGTTTCCTCCGGAGTGAAGTTGGAAAACATTAGCAAAACCTACAAGGGTGTGACCGTGTTGAANGACGTGAGCTGGGAAGTGAAGAAGGGGGAGAAAGTGGGCCTCGTTGGCGTGAACGGCGCCGGGAAGACGACCCAGATGAGGATAATCGCGGGCCAGGAAGAACCGGATTCGGGTAACGTGATTAAGGCCAGGCCCAACATGAGAATCGCGTTTCTGAGCCAAGAGTTTGAGGTGTCACTGAGCAGGACGGTGAGGGAGGAGTTCATGAGTGCTTTCAAGGAGGAAATGGAGGTTGCAGCTAAGCTGGAGAAGGTTCAGAAGGCGCTTGAGGGTGCTGTCAATGACTTGGAGTTGATGGGAAGGCTTTTGGATGAGTTTGATTTGCTTCAGAGGAGGGCACAGAATGTGAACTTGGATGTCGTTGATGCTAAGATAAGTAAGTTGATGCCTGAACTTGGGTTTGCTCCTGAGGATTCTGATAGGCTGGAACCAGATTTATTATTGTTAGATGAGCCCACAAATCACCTTGATCTTGACACCATTGAGTGGCTTGAAGACTATCTTAACAAGCAGGACGTGCCGATGGTTATCATTTCCCATGACAGAGCTTTTCTTGATCAACTGTGTACGAAAATTGTGGAAACTGACATGGGTGTAGCCAGGACATATGAGGGAAATTATTCTCAGTTTGTAGTTTCGAAGGCAACTTGGATTGAAGCACAGTATGCTGCATGGGAGAAGCAGCAGAAAGAAATTGAACAGACAAAGGACTTGATAAACAGGTTAGGTGCCGGAGCAAATTCTGGCCGTGCTTCATCAGCCGAGAAGAAATTGGAAAAACTTCAGGGAGAGGAACTAGTAGAGAAGCCATATGAACGGAAACAAATGAAAATCAGGTTCCCTGAGCGTGGAAGGAGTGGAAGATCTGTTGTAACAATTAAGAACTTGGAATTTGGCTTTGAGGATACGAAACTCTTCGANAAGGCAAGTCTTACAATCGAAAGGGGAGAAAAAATTGCCATTATTGGTCCAAATGGATGTGGCAAGAGTACTTTACTGAAATTGATTATGGGTTTAGAGAAGCCAATCGGGGGTGAAGTTATGCTTGGGGAGCATAATGTATTACCTAACTATTTTGAGCAAAATCAGGCTGAGGCACTTGATCTGGACAAGACAGTGCTTCAGACAGTAGAGGAAGCTGCAGAGGACTGGAGGATTGATGATATTAAAGGACTTCTTGGGCGTTGTAATTTTAAATCTGATATGCTTGACCGAAAAGTTTCCCTGTTGAGTGGTGGTGAGAAGGCAAGGCTGGCTTTTTGCAAATTCATGGTAAAACCATCAACTCTGCTTGTTTTGGATGAACCAACCAATCACTTGGATATACCATCTAAAGAAATGCTCGAGGAGGCAATATCCGAGTACGAGGGCACTGTTATCACAGTATCTCATGATCGATACTTCATAAAGCAGATAGTTAATAGAGTGATTGAAGTTAAAGATGGCACTTTACAGGATTATACAGGCGATTACAATTATTATTTAGAGAAGAATCTCGAGGCTCGGGAAAGAGAGCTTGAACGCGAGGCAGAGCTTGAGGACAAAGCTCCTAAAGTGAAAGCCAAATCTAAGATGTCTAAGGCTGAGAAAGAAGCACGGAAGAAGCAAAAGATGCAGGCCTTTCAGGCAGCAAAACAGAAGTCCAAAGGTGCGAAAAATGCAAAGAGATGGAATTGAGTAACCCACCATTACATCACAAGAGCTCCTCCATTTTAGACTAGTTTTCCACGTGAGGAGAATAGAAGGTGAAGTAGCNTATTGAGTTAGCTACTGCCTTTGTATATATCATGCATGAATAGACTAAAATTGTATGAATATAATTCATCAGAATANAGAAGCTTGATTATAGCATATGCGATTCTGGCCAAAGTTTGCAGTCTCAACAGCAACTTGTTTTTTTGGGTCAAAAAAACAGCAACTTGTTTTCCAGGCAACGCAAAAAAAAAAAAAACTGATTCACTGGACCACAAGATC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00999	49638	54824	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005524 ATP binding

GO:0016887 ATPase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000999s00024094.1	PF00005.22	ABC_tran	131	218	3.30E-13
Glyur000999s00024094.1	PF12848.2	ABC_tran_2	325	412	3.70E-20
Glyur000999s00024094.1	PF00005.22	ABC_tran	440	570	4.30E-27

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	22.255
SRR1783600	control	21.757
SRR1783602	moderate drought stress	40.383
SRR1811619	moderate drought stress	39.532

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	22.421
DRR006520	Root Summer glycyrrhizin high producing strain	22.599
DRR006521	Root Winter glycyrrhizin high producing strain	53.806
DRR006522	Root Winter glycyrrhizin high producing strain	52.453
DRR006523	Root Summer glycyrrhizin low producing strain	32.973
DRR006524	Root Summer glycyrrhizin low producing strain	33.100
DRR006525	Leaf Summer glycyrrhizin high producing strain	183.358
DRR006526	Leaf Summer glycyrrhizin high producing strain	182.952

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	28.763
SRR2868004	Drought Stress (root)	38.305
SRR2967015	Control (root)	33.202

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	127.429
SRR9715740	Leaf	232.367
SRR9715741	Leaf	119.730
SRR9715739	Root	4.581
SRR9715742	Root	21.778
SRR9715743	Root	18.879

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	19.666
SRR8749028	MeJA induced 9h	41.944
SRR8749029	MeJA induced 9h	19.546
SRR8749030	Uninduced	16.940
SRR8749031	Uninduced	7.566
SRR8749032	Uninduced	8.656

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	34.631
SRR8400027	Control - Root	31.248