Gene detail

Gene detail information of Glyur000999s00024089.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G64790.1	7.00E-151	O-Glycosyl hydrolases family 17 protein
NR	AFK43211.1	0	unknown [Lotus japonicus]
COG	YP_002296788.1	2.00E-08	glycosyl transferase family protein [Rhodospirillum centenum SW]
Swissprot	tr\|Q9M088\|E135_ARATH	5.00E-173	Glucan endo-1,3-beta-glucosidase 5 (Precursor)
trEMBL	tr\|I3SSG9\|I3SSG9_LOTJA	0	Uncharacterized protein {ECO:0000313\|EMBL:AFK43211.1}

Sequence

Transcript Sequence

>Glyur000999s00024089.1
ACGGCTCGAACCATGACTCGAGCCAAGGCTCTTTGTTTGATACTGGTCCTAGCTTATTGGCAACTAGAATGTGCCCAAGGGGCAGAGTCTATACCAGGTCTTGGTATCAATTGGGGTGCACTTGCATCCCACCCCATGCAACCTCACATTGTGGCGAAAATGCTGAAGGACAATGGGATCAAGAAGGTGAAGCTTTTCGATGCAGATTCTTGGACCGTGAGTGCTTTTTCCGGTACAGACATTGAAGTCATGATCGGAATTCCTAATGACCAATTGAGTAAATTTTCTAGAAGCAAAGGAGATGCAGAAGATTGGGTAAAAGAAAATGTCACCAAGCATCTTCATAAGGGGGGCGTGAACATCAGATACGTATCCGTTGGGAATGAGCCATTCTTGGAAAGTTACAACGGTTCATATGTGACGACCACATTCCCATCTATGCAAAATATTCAAAAGGCCNTCGACAAGGCTGGTTTAGGAGACAGAGTCAAGGTGACCACGGCTTTGAATGCCGATGTTTACGAGTCCCATTCAAACAAGCCATCAGATGGAGATTTCCGAGGTAACATTCGCGATGTCATGGAACAAATACTGCGTTTCCTTCACGAAAGGGATTCACCATTTCTTGTCAACATATACCCTTTCCTCAGCCTGTACCAAAACGAAAACTTTCCACAGGAATTAGCATTCTTCGATAGCCAGGGCAAAACAATTGAAGACAAGAACGCACAATACAGCAACGTGTTTGATGCAAACTTAGATACCCTTGTTTGGTCAATGAAGAAGGCTGGTTACCATGACATGAGAATTGTGGTTGGTGAAATTGGGTGGCCAACTGATGGTAACAAAAACGCTAATGTCAAGAATGCACAAAGGTTCTACCAAGGGTTCCTTAAGAAAATGGCAAGCAAGAAAGGAACCCCACTTCGCCCTGGACCAATTGATGTGTACCTCTTCGCACTTTTCGATGAGAACTTGAAGAGTATTGGCCCTGGCAACTTCGAGCGTCACTGGGGGATTTTCCGTTATGATGGAAAGCCAAAGTTCCCAATAGATTTTTCTCGTAATGGAGAAGACAAATGGCCCGTAGAAGCAAAAGGGGTTCTCTACCAAGAACACAAATGGTGTGTCCTGAACAGTGATGTCAAGAACTTGAGCCTGGTGCCTGATGCATTNGGCTATGCTTGCACTGGTGCTGATTGTACAAGTTTGGGATATGGTTGTTCTTGTGGGGATTTAGATCTTGCTGGCAATGCCTCCTATGCTTTCAACCAATACTTTCAGACGAGGGATCAGAGCGTTGAGGCATGCGATTTCAATGGATTGGCCACAATTGTCACAAAAGATCCATCAAATGGAACTTGCTTGTTCCCTATAGAAATCCAGAGCAGTGGANACATGCTCACCGCAATGCGTATAGTGGGAAGCCTTTTAGTTGGATTGTCATTGTTTTATGTAACATTTGCGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00999	32144	34098	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH17,CBM43

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000999s00024089.1	PF00332.13	Glyco_hydro_17	34	353	4.40E-79
Glyur000999s00024089.1	PF07983.8	X8	374	444	8.70E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.050
SRR1783600	control	0.050
SRR1783602	moderate drought stress	0.104
SRR1811619	moderate drought stress	0.098

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.063
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.062

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.138
SRR2868004	Drought Stress (root)	0.347
SRR2967015	Control (root)	0.166

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.091
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.044
SRR9715739	Root	0.234
SRR9715742	Root	0.136
SRR9715743	Root	0.125

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.027
SRR8749029	MeJA induced 9h	0.041
SRR8749030	Uninduced	0.389
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.039

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.530
SRR8400027	Control - Root	0.788