Gene detail

Gene detail information of Glyur000998s00023003.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G19810.1	4.00E-92	CCCH-type zinc finger family protein
NR	XP_004503514.1	0	PREDICTED: zinc finger CCCH domain-containing protein 20-like [Cicer arietinum]
Swissprot	tr\|Q9M0G2\|C3H49_ARATH	7.00E-126	Zinc finger CCCH domain-containing protein 49
trEMBL	tr\|E1U3U6\|E1U3U6_CICAR	0	Zinc finger protein ZF3 {ECO:0000313\|EMBL:ACO54858.1}

Sequence

Transcript Sequence

>Glyur000998s00023003.1
ATGTCCATGCTGCTAGGGGAACCCCCGCCCCACCGTGCAAATCCAACCGTACACGTGCCACCGTGGTCGATGGTGTGTGATTCCACGCCGGAGGAGATGTTCTCCCCTTTAACCGCTGCCAATGCCGATTACTCTCCGTACTACTTGCATGACGCGCTGAGCGCGCTTCAGCACTATGTTGTTCCCTTAAACGACAACGACGATGCCGATTCCGACTCGGAGGTCGTTCCGGGTGGCGAGTCGGTGGACGCGTACTCGGGTGACCATTTCCGCATGTTCGAGTTCAAGGTACGGAGGTGCGCACGTGGCAGGTCACATGACTGGACGGAGTGCCCTTACGCTCACCCCGGAGAGAAGGCTCGCCGCCGTGACCCGAGGAAGTACCACTATTCCGGCACCGCATGTCCCGATTTCCGNAAGGGGAGTTGCAAGAAAGGTGACGCGTGCGAGTACGCGCATGGAGTGTTTGAGTGCTGGCTCCACCCCGCGCGTTACCGGACTCAGCCCTGTAAGGACGGTACCAGTTGCCGCCGGCGTGTCTGTTTCTTCGCTCACACGGCGGAGCAACTCAGGGTTCTGCCACAGCAGAGTCCCCGGAGTGTTGCCAACTCNGCTGATTCCTACGATGGTTCTCCTCTCAGGCTCGTGATTGAGTCCTCCTGTGCCAAGACCCTCCCCTTCCTGTCTTCTCCGGGTTCTGTTTCCCCGCCAGTGACTCCTCCGGTGGAGTCTCCTCCGATGTCTCCGATGGCGCGGTCGCTGAGCCGGTCTCTGGGTTCGAGCTCGGTGAGTGTTAACGAGATGGTGGCTTCTCTGCGTAACTTGCAACTGGGTAAGATGAACTCGTTGCCCTCTTCCTGGAACGTTCCGATGGGGTCTCCTGGATTCGGATCCCCGAGGGGACCCGTGATCCGACCCGGATTCTGTAGCCTGCCCACGACGCCTACNACTACGCAGGCTGCCCCGGGGCGTGGGGGTGGTAACTATTTTGATCTGTGGGATCAGAGGTGTGAGGAGGAGCCAGTGATGGAGAGGGTGGAGTCTGGAAGGGACATACGGGCGAAGATGTTTGAGAAATTGAGCAAAGAGAACTCTCTTGGTAGNTCGGGTTCGGGTTCAGTGGGTGGAGCCCCGGATGTTGGGTGGGTCTCGGAGNTATTGAGCCCGTTCTGGGGTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00998	85284	86462	-

Gene family

Gene family	subfamily
Transcription Factors Family	C3H

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000998s00023003.1	PF00642.19	zf-CCCH	134	154	3.90E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	134.540
SRR1783600	control	135.971
SRR1783602	moderate drought stress	210.672
SRR1811619	moderate drought stress	209.621

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	167.394
DRR006520	Root Summer glycyrrhizin high producing strain	165.039
DRR006521	Root Winter glycyrrhizin high producing strain	196.552
DRR006522	Root Winter glycyrrhizin high producing strain	194.719
DRR006523	Root Summer glycyrrhizin low producing strain	102.643
DRR006524	Root Summer glycyrrhizin low producing strain	103.944
DRR006525	Leaf Summer glycyrrhizin high producing strain	30.192
DRR006526	Leaf Summer glycyrrhizin high producing strain	30.448

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	50.418
SRR2868004	Drought Stress (root)	135.487
SRR2967015	Control (root)	238.440

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	33.050
SRR9715740	Leaf	16.491
SRR9715741	Leaf	23.181
SRR9715739	Root	295.859
SRR9715742	Root	162.470
SRR9715743	Root	204.965

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	366.383
SRR8749028	MeJA induced 9h	880.626
SRR8749029	MeJA induced 9h	512.418
SRR8749030	Uninduced	8.674
SRR8749031	Uninduced	137.547
SRR8749032	Uninduced	421.561

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	95.849
SRR8400027	Control - Root	110.212