Gene detail

Gene detail information of Glyur000998s00023002.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G56680.1	0	Class II aminoacyl-tRNA and biotin synthetases superfamily protein
NR	XP_004503515.1	0	PREDICTED: asparagine--tRNA ligase, cytoplasmic 1-like [Cicer arietinum]
COG	YP_004509817.1	5.00E-158	asparaginyl-tRNA synthetase [Porphyromonas gingivalis TDC60]
Swissprot	tr\|Q9SW96\|SYNC1_ARATH	0	Asparagine--tRNA ligase, cytoplasmic 1
trEMBL	tr\|V7CQ72\|V7CQ72_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW32249.1}

Sequence

Transcript Sequence

>Glyur000998s00023002.1
ATGGTAGTGAAAGTTTACGGCCCCCATTGTGCTGCAACCAAACAAGTGTTGGTTTGTCTGGTTGAGAAGGAAATCGAGTTTGAGGTTGTCCCTCTTAATGTTCTTAATGGGGAACATAAGGATCCTGAGTACCTCAAATTACAGGTCCACCTTTTCTATTTTCCTTTCATCTTTGTAAAATATATATGCTATAAGGGTGTGGCAGCGATTGCCGCCGCTACAACAACAATGTCAGAATCTCCTCCGACGGACCAATTGGCCGCCGCCACCATCGCCGACGAGGTTCCCAGGGCGAAATTCTCCGACCGCGTCCTGATCAAATCCATAATCCGCCGTGAAGACGGCGGNTCGGGTCTCGCGGGTCGGAAGGCTCGGGTCGGCGGGTGGGTGAAGACGGGAAGGAAGGCCGATAAGGACGCGTTCGCCTTTTTGGAACTGAACGACGGTTCCTGCGCCGGCAACCTTCAAGTGATCGTGGACCTTCAAGTGATCGCGGAGGCCTCGCTCGCCGACCTCGGACAGATCGTCGCTACCGGAACATGCGTCGTCGTCGACGGCCACCTGAAGTTACCACCTTCCGGCGCCAAGCAGAAGATCGAGCTTCGCGCCGATAAGGTCCTCCATGTGGGTCACGTCGATCCAACTAAGTACCCTTTGCCCAAAACGAGACTCACTCTCGAGTTCCTTCGAGATTACGTTCATCTTCGTCCCAGAACCAACACTATCTCTGCGGTTGCTCGAATTAGGAATGAACTTGCTTATGCTACGCATACTTTTTTCCATGAGGAAGGGTTTCTTTATGTGCACACGCCAATTATCACCACGAGTGATTGTGAGGGTGCGGGTGAGATGTTTCAAGTGACAACTCTGATCAATGAAGCAGAAAGGCTGGAGAAGGAGCTGAAGCAGAACCCTCCTCCTACGGAAGCTGATGTGGAAGCTGCTGGGCTTCTTGTTCAGGAGAAGGGGGAGATTGTTTCGCGGTTGAAGTCTGCGAAAGNGGATAAGAAGGAAATTGGGGCTTCTGTGAATGAACTTAAGAAAGCGAAGGAGAGTCTCTCCAAGGTGGAGGAGAGATCTAAGCTTAAGCCTGGTGTTCCTCAAAAGGATGGAAAGGTGGACTACACTAGAGATTTCTTTGCCCGTCAAGCGTTTCTCACTGTCTCGGGCCAGCTTCAAGTTGAGTCTTATGCATGTGCTCTTAGTAGTGTATATACCTTTGGCCCAACGTTTCGTGCGGAGAATTCTCACACTTCNAGGCATTTGGCAGAATTTTGGATGGTAGAACCTGAAATTGCGTTTGCAGACTTGGAGGATGATATGAACTGCGCCGAGGAGTATGTGAAATTTTTGTGTCAGTGGTTATTGGACAACTGCCAAGAAGATATGGAATTCATGGCTGACAAGTTTGATAAAGGTTGCATTGATCGTTTGAAAATGGTTGCTTCCANCCCATTTATTCGACTTACATATACAGAAGCTGTGAAAGTACTAGAGGAAGCTGTGAAGAATGGTAAGAAATTTGAGAATGAAGTAAAATGGGGGATCGACTTAGCATCTGAGCATGAAAGATACCTAACAGAGGTAAAGTTTCAGAAGCCTGTCATTGTCTATAACTATCCAAAAGAAATCAAAGCATTCTACATGCGCCTCAACGATGACTTAAAGACAGTGGCTGCCATGGATGTTCTTGTCCCAAAGAAACATGTACATGTAATTTCAGGTTGGAGAGTTAATTGGTGGAAGCCAAAGGGAAGAGCAATAAAGGAGATGGGACTGCCTCCGGAGCCATATGAGTGGTACCTTGATCTGAGGCGGTATGGAACGGTGAAACATTCTGGATTTGGTCTTGGCTTTGAAAGGATGATTCTTTTTGCCACCGGCCTGGAAAACATTAGAGATGTGATTCCCTTCCCACGATATCCTGGCAGAGCAGATCTATGATTATTTATTACCGATTAGAAATGGCTACTACAATTCTCTTGCTTTTAGTAGTTGCGTTGGACAACGGAAAAATAGTTTTCAAATGTAGCATAAGCATTACTCTTGTGGTGGTTAAATCAAATTTTTTATCTCCGCTTTTATGTTGAATTTCATTCATTACTTTAGTCATTACATAGGATTTTTTTTTTGGTCAAGTCATTACATAGGATTGAAACAACTCTTCTGCAAGCCAAATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00998	74798	78550	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01893	NARS, asnS	EC:6.1.1.22	Aminoacyl-tRNA biosynthesis	map00970

Gene Ontology

biological_process

GO:0006418 tRNA aminoacylation for protein translation

GO:0006421 asparaginyl-tRNA aminoacylation

cellular_component
GO:0005737 cytoplasm

molecular_function

GO:0000166 nucleotide binding

GO:0003676 nucleic acid binding

GO:0004812 aminoacyl-tRNA ligase activity

GO:0004816 asparagine-tRNA ligase activity

GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000998s00023002.1	PF01336.20	tRNA_anti-codon	125	206	5.90E-06
Glyur000998s00023002.1	PF00152.15	tRNA-synt_2	227	295	1.80E-10
Glyur000998s00023002.1	PF00152.15	tRNA-synt_2	372	640	1.40E-49

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	50.211
SRR1783600	control	50.577
SRR1783602	moderate drought stress	71.867
SRR1811619	moderate drought stress	71.837

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	61.890
DRR006520	Root Summer glycyrrhizin high producing strain	61.562
DRR006521	Root Winter glycyrrhizin high producing strain	48.421
DRR006522	Root Winter glycyrrhizin high producing strain	47.116
DRR006523	Root Summer glycyrrhizin low producing strain	104.987
DRR006524	Root Summer glycyrrhizin low producing strain	104.501
DRR006525	Leaf Summer glycyrrhizin high producing strain	31.162
DRR006526	Leaf Summer glycyrrhizin high producing strain	30.610

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	124.009
SRR2868004	Drought Stress (root)	109.272
SRR2967015	Control (root)	114.030

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	85.773
SRR9715740	Leaf	78.097
SRR9715741	Leaf	82.412
SRR9715739	Root	74.596
SRR9715742	Root	115.014
SRR9715743	Root	112.049

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	132.626
SRR8749028	MeJA induced 9h	81.669
SRR8749029	MeJA induced 9h	90.255
SRR8749030	Uninduced	38.535
SRR8749031	Uninduced	37.199
SRR8749032	Uninduced	44.616

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	95.146
SRR8400027	Control - Root	92.137