Gene detail information of Glyur000998s00022998 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G56710.1 | 2.00E-13 | Ribosomal protein L31e family protein |
| NR | XP_007152936.1 | 4.56E-34 | hypothetical protein PHAVU_004G172800g [Phaseolus vulgaris] |
| Swissprot | tr|Q9M573|RL31_PERFR | 1.00E-31 | 60S ribosomal protein L31 |
| trEMBL | tr|V7C7N0|V7C7N0_PHAVU | 2.00E-34 | Uncharacterized protein {ECO:0000313|EMBL:ESW24931.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00998 | 60662 | 62012 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000998s00022998.1 | PF01198.14 | Ribosomal_L31e | 1 | 45 | 3.10E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 262.392 |
| SRR1783600 | control | 283.427 |
| SRR1783602 | moderate drought stress | 168.921 |
| SRR1811619 | moderate drought stress | 176.260 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 411.327 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 432.814 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 215.842 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 219.520 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 415.348 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 408.852 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 99.052 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 107.419 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 619.557 |
| SRR2868004 | Drought Stress (root) | 426.948 |
| SRR2967015 | Control (root) | 409.708 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 186.127 |
| SRR9715740 | Leaf | 168.618 |
| SRR9715741 | Leaf | 157.351 |
| SRR9715739 | Root | 308.542 |
| SRR9715742 | Root | 285.608 |
| SRR9715743 | Root | 309.020 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1115.144 |
| SRR8749028 | MeJA induced 9h | 424.704 |
| SRR8749029 | MeJA induced 9h | 1015.396 |
| SRR8749030 | Uninduced | 154.311 |
| SRR8749031 | Uninduced | 128.774 |
| SRR8749032 | Uninduced | 238.489 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 495.395 |
| SRR8400027 | Control - Root | 387.509 |