Gene detail

Gene detail information of Glyur000995s00036607

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G11820.1	3.00E-100	syntaxin of plants 121
NR	XP_003590328.1	0	Syntaxin-121 [Medicago truncatula]
Swissprot	tr\|Q9ZSD4\|SY121_ARATH	1.00E-134	Syntaxin-121
trEMBL	tr\|B7FI20\|B7FI20_MEDTR	0	Syntaxin of plants 122 protein {ECO:0000313\|EMBL:AES60579.1}

Sequence

Transcript Sequence

>Glyur000995s00036607.1
AAAATTCAATCACATCGTTCAAAGAACAACTACAGAAGCCATTGTAACTTTNCCCCATTACATATAAATACTTATATACGCTCATTCAATTTCTCTGATCAGTCTCGTTCAATCGAGTATTCAACTAATTATCCCACAAAAGTAAAAACCACCTTCTAATCTGCTTCAATCATATAAGCAAAACCCGAAAAAACCACAGAATAATCAAAACAAGAATGAACGACCTGTTCTCGGGCTCCTTCTCCCGCTTCAACAACAGGGAACAAGTCTCCCCAGAAAACCACCACCACGTGATTGAGATGGCGTCGGTGTCGGTGTCGCCGACAACGGTGAACCTGGACATGTTCTTTGAGGAAGTGGAGAGAGTGAAGGAGGAGCTGAAGGAGTTGGAGCGTCTCCACGAGAGCCTGCGTGGGTCCCACGAGAAGAGCAAGACCCTCCACAGCGCGGAGGCCGTCAAGGAGGTGCGATCCCGCATGGACGCTGATGTGGCACTTGCACTCATGAAGGCCAAGCTTGTCAAGTCCAAGCTTGAGGCGCTCGACCGGTCCAACGAAGCCAGCCGGAGCTTGCCCGGTGCCGGCCCCGGCTCGTCGTCGGACCGGACCAGGACTTTCGTGGTGAGTGGCCTCAGGAAGAAGCTNAAGGACTCCATGGACAACTTCAACACCCTCAGGCAACAGATATCCTCCGAGTATAGAGAGACCGTTCANCGTAGATACTACACTGTCACCGGAGAGAACCCCGATGACAAAACCCTTGATCTCCTCATCTCCACTGGTGAAAGTGAGACATTCTTGCAGAAGGCGATACAGCAGCAAGGGAGAGCGAGCGTGATGGACACAATCCAAGAGATACAAGAGAGGCACGACACGGTGAAGGANATAGAGAGGAATCTGAACGAGCTGCACCAGGTGTTCCTTGACATGGCCGTGTTGGTCCAGACACAGGGGGAACAGCTGGACGACATCGAGAGCCACGTGGCGCGAGCCAATTCGTACGTTAGAGGTGGGGTCCAGCAGTTGCATGTAGCAAGGAAGCACCAGATGAATACCCGGAAGTGGACCTGCATTGCCATCTTGTTGCTCCTCATCATCATCTTGATCATAGTTCTCCCTATTGTCCTTAGCAATTAATTGACACTTTCAAATTAATATGATTGGTGGGGTTATGATATGATGACCTATATGAAGAAATTAAAAAGGGGACTGGTTCAAAGCTTAATATNAGTCAAGGTCAACTAATTATGCCGCCTGCATTAGAAAAATATACACCAATGTTTTTGGTCGCATGTGTTGATTTACCATTTCCCATGCAATTGGTACCTGTTTGAAGGGATGAGACGTTTTGGTTCGATCGGTAATTTCTAGAGCCCCATGGTCAAGGTGTGTATCTACCGGTTAACTACCACGAAGAAAACTCACTGGAGCTAAGGTTGGGTGATGTTACTTTTCNTGGTGGTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00995	91865	93932	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006886 intracellular protein transport

GO:0016192 vesicle-mediated transport

cellular_component
GO:0016020 membrane

molecular_function

GO:0005484 SNAP receptor activity

GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000995s00036607.1	PF00804.20	Syntaxin	41	147	2.10E-11
Glyur000995s00036607.1	PF05739.14	SNARE	216	277	3.60E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.464
SRR1783600	control	0.448
SRR1783602	moderate drought stress	0.586
SRR1811619	moderate drought stress	0.587

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.588
DRR006520	Root Summer glycyrrhizin high producing strain	0.597
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	2.391
DRR006524	Root Summer glycyrrhizin low producing strain	2.709
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.888
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.886

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.188
SRR2868004	Drought Stress (root)	26.129
SRR2967015	Control (root)	22.817

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.977
SRR9715740	Leaf	1.645
SRR9715741	Leaf	6.068
SRR9715739	Root	0.834
SRR9715742	Root	0.613
SRR9715743	Root	0.889

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.443
SRR8749028	MeJA induced 9h	12.648
SRR8749029	MeJA induced 9h	7.442
SRR8749030	Uninduced	90.979
SRR8749031	Uninduced	44.793
SRR8749032	Uninduced	14.348

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.322
SRR8400027	Control - Root	1.769