Gene detail

Gene detail information of Glyur000995s00036606

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G11820.1	3.00E-105	syntaxin of plants 121
NR	XP_004497646.1	0	PREDICTED: syntaxin-121-like [Cicer arietinum]
Swissprot	tr\|Q9ZSD4\|SY121_ARATH	2.00E-145	Syntaxin-121
trEMBL	tr\|I1JGG9\|I1JGG9_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G35230.1}

Sequence

Transcript Sequence

>Glyur000995s00036606.1
CACGAATAAGATCCTACGCGCTTCCGCCCCTTGTTTAACAGTTCAACCTGTCCGATATTACGAAGTTTCTTCCTTCTTCTTCTGCCTCTTTAAACAAAAGAAACCAGTCCACACACCCGCCACCACACGCCACGCGTTACCACCTACGGATACAGACCGATCCCTTCTCTCTCTCTCTCTCTCTATCTCTCTCTTTCTCTATCGTCTTAAACCCCCCATTGACTTCTCAGTCCCTACTCTCCCGGTAGTAGTTGAAATACTCATAATTCCAATTGAAACGAATCCAACCCTCTCTTTTGTCTTCACAAAAACTCCTCCTCTCTCCCCATTCATTCATTATCACATATCATAAGCATAACCCATTTTATTATTTTTTATTTTTTATTATCATTATTGGATTCCACCCCCCAAAAAAAAAAATGAACGACTTATTCGCCGGCTCATTCTCTCGCTTCCGCAGCGACGAAGCCTCACCGGATCGCCACCACGTAATCGAGATGACAGGCGGCGGCACCGGCGGCGGAAGGGTGAACCTGGACAAGTTCTTCGAGGACGTGGAGGGAGTGAAGGAGGAACTAAGAGAGCTAGAAGCTCTAGCACAGAAACTAGAGAGGAGTCACGAGAAGAGCAAGACGGTGCACGACGCGAAAGGGGTGAGGGAGCTACGATCAAGCATGGACGACGACGTTTCGGTGTCACTTAAGAAGGCCAAGTTGGTGAAGCTCAAACTTGAGGCACTGGAACGGTCCAACGCTGCTAATCGGAACCTACCCGGTTGTGGACCCGGGTCTTCCTCTGACCGAACCCGAACCTCCGTGGTCAACGGCTTGAAGAAGAAGCTCAAGGACTCTATGGATACCTTTAACCGTATTCGCCAGCTTATCTCTTCTGAGTATAGGGATACCGTCCANCGCCGTTACTTCACCGTTACCGGCGAAAACCCCGATGAAAAGACCCTCGATCTGTTGATCTCCACCGGTGAGAGTGAAACCTTCCTTCAGAAAGCTATTCAAGAACAAGGAAGGGGCAGAATTATGGACACCATAAATGAGATTCAAGAGAGGCATGATGCTGTCAAGGAGCTGGAGAAGAGTCTCCAGGAGTTGCACCAGGTGTTCCTCGACATGACAGTGTTGGTGCAGTATCAAGGTGAGCAATTGGACGATATCGAGAGCCATGTGGCGAGAGCACACTCGTTTGTGCACACTGGAGCTGAGCAGTTACAGACTGCAAGGAAGCACCAGAAAAACACCAGGAAATGGACCTGTTATTGCATCATCCTTCTTCTGGTGATCGTCTTGTTTGTGGTGCTCTTCACTGTGAGACCTTGGGAAAATAATGGTAATGGCGGCAATGGGGGTAGTCAGCCTGCTCCGGCACAAACACCTCCATCTCCCCCTCCTCCGGCTGGTGCTTAACCGTAGGGATTAAAGAGTCTATAAACTGCTATGAATATTGGTTTCATTTATTTTGATTTGAGGATTGAGATATTGTGTTTTTGAGATTATCTGGCAAAGGGTGTGACTAACATGGATTATTAGCATATGATTGGAAAGGAAACCATGGAAGGGTCGGATGATGATGAATCTAAGTCTGTGATCTAGAAAGGAAATGGTTGATTAATTGGTCTGTTGAGGTCTTGAGGAGGGGTTTTTGGAAACCATTATTTTGGGTATCATATTCTTTTTCTGCTCGACGCTCGTGGGGCTTGTGGACCGGGCAGCCGAGCAACACCCCGTGGAGGACCACTTCACGTCTGATCGATCAAAAGCTTGGTGCGATGGTTCTTAACTTGCGCCGGCCTTCCCCCCTCGCCGATAGACCAATGAGTATCCAATCCCACACGCTGTATTATGATCGGTCGTCCGAGGACCAATGGACTTGCGTTTGTACCCCGAAGATCANGGCAACTATCCATCTGGTATCCCATGTAACTGCTTCGCATATGGGTCCTGAAGATCACGGCCACCATCCCCCACGATCAGCTTGGTTTTATCCCATTCACCCCGCGGATAAGGGGGAACCNGTACTTCTCGGAGGAGCAGTTATGAGGCACATTAAAATACCTTGGAGCTGGGCTAGAGGGGCATGTTGCATTTTTACACCGCCGTAGACTTGGGACTTGGCTTTAGAGACTCTCACNGGGTACTAAGGTTGATCTCCGGTCAGATATNCGGCGAGAACAGTAACATTGTAGACTTTTAGTTTAAAAGAAGTGCTAGCAATACACTTTTTAACACACCTAGATTTTGTAGCATTGTAAACTTTCAGTTTAATCCTCTTTGCTTTAGATCTATTGGTCACAAATATGGTGGCTTCTAGGGTGTGGGTGCTAAGAAATCCCTCACTGGGGAGGGAGGAAAATGGCCTGTAATAAGAGGTCATTTCAGTGGTGAAAATAGGATAAGAATATTTATAAGAGCAGCGTTACAAAATTTGGCAAATTACACGAGACCAAATATGCATTTCCCCACATACTGTGCTTCATTTGGTTGTGTAGACCACTGTTTTGTTCTTGTAAAAGTAACCCTCGTTCCACTTCTCAAATCCTCATCCTCAAGAAGAAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00995	85546	89453	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006886 intracellular protein transport

GO:0016192 vesicle-mediated transport

cellular_component
GO:0016020 membrane

molecular_function

GO:0005484 SNAP receptor activity

GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000995s00036606.1	PF00804.20	Syntaxin	39	145	6.00E-13
Glyur000995s00036606.1	PF05739.14	SNARE	214	276	4.20E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.575
SRR1783600	control	6.597
SRR1783602	moderate drought stress	4.567
SRR1811619	moderate drought stress	4.537

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	60.660
DRR006520	Root Summer glycyrrhizin high producing strain	60.887
DRR006521	Root Winter glycyrrhizin high producing strain	15.950
DRR006522	Root Winter glycyrrhizin high producing strain	15.593
DRR006523	Root Summer glycyrrhizin low producing strain	147.424
DRR006524	Root Summer glycyrrhizin low producing strain	148.489
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.274
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.978

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	16.750
SRR2868004	Drought Stress (root)	25.625
SRR2967015	Control (root)	36.295

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	83.883
SRR9715740	Leaf	62.154
SRR9715741	Leaf	85.397
SRR9715739	Root	208.500
SRR9715742	Root	223.677
SRR9715743	Root	215.754

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	92.813
SRR8749028	MeJA induced 9h	156.354
SRR8749029	MeJA induced 9h	88.278
SRR8749030	Uninduced	81.005
SRR8749031	Uninduced	30.934
SRR8749032	Uninduced	49.275

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.581
SRR8400027	Control - Root	43.056