Gene detail

Gene detail information of Glyur000994s00025832

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G11080.2	0	serine carboxypeptidase-like 31
NR	KEH31128.1	0	serine carboxypeptidase-like protein [Medicago truncatula]
COG	NP_902682.1	2.00E-27	serine carboxypeptidase [Chromobacterium violaceum ATCC 12472]
Swissprot	tr\|O04084\|SCP31_ARATH	0	Serine carboxypeptidase-like 31 (Precursor)
trEMBL	tr\|A0A072UPX6\|A0A072UPX6_MEDTR	0	Serine carboxypeptidase-like protein {ECO:0000313\|EMBL:KEH31128.1}

Sequence

Transcript Sequence

>Glyur000994s00025832.1
ATCAAAAGTGGAAAACAACCTCCCATTCTCTCATTGTGTGAGCTTCCATTATGGATAACATTGTATTAAAGCTGACCTTGGTTCTTGTACTTTTTCTCTCTTTTGAGCCTGTTTTTTCTTCTAGACATAGCAGGCAATATTATTGGGGTGGAGGAAGAAAATTGATGGTCTCTGGTGAAAATGATGATCTTGTGACTAACTTGCCTGGCCAGCCTCAAGTAGATTTCCAGCACTATGCTGGGTATGTCACAGTCAACGAAACCAATGGAAGGGCACTCTTTTACTGGTTCTATGAGGCTATGACCAAGCCAGAAGAGAAACCATTGGTGCTGTGGCTTAATGGAGGACCTGGGTGCTCTTCTGTGGGATATGGAGCAACACAGGAGATTGGCCCATTTTTAGTGGATTCTGATGGCCATGGCCTTAAATTTAATAACTTCTCATGGAACAGAGAAGCCAACATGTTATTCCTGGAATCTCCTGTTGGAGTTGGCTTTTCCTACTCAAATACAACCAGTGATTATGAACAATTGGGTGATGACTTAACAGCTAATGATGCTTACTCTTTTCTGCACAATTGGTTCCTCAAGTTCCCATCATATAGANGGAGGACATTTTACATAGCAGGGGAGAGCTATGCTGGAAAGTATGTCCCAGAGCTGGCTGAACTTATCCATGATAGGAACAAGGACCCGTCCCTTTATATTGATCTCAAGGGTATTTTGCTAGGTAATCCTGAAACATCTGATGCTGAGGACTGGATAGGACTAGTTGATTATGCTTGGAGCCATGCTGTGATATCTGATGAAACTCACAAAACAATCAAAACAAGTTGTGACTTTAACAGCAGTGATCCATGGCGTAATGAAGATTGTAGTCAAGCTGTGGATGAAGTGCTCAAACAGTATAACGAAATTGACATCTACAGCCTCTACACCTCTGTCTGTTTTGCCGCTACAGCACGTTCAGATGGTCAATCAATGCAAACTTCGATGAAGCGTTCATCTACAATGATGCCTAGATTGATGGGTGGTTATGATCCATGCCTGGATGACTATGCTAAAGCTTATTATAATAGACCAGATGTTCAGAAGGCCCTCCATGCCAGTGATGGTCACAGTCTAAAGAATTGGAGTATTTGCAACAACAAGATATTCAATGACTGGGCAGATTCAAAGCCATCGGTCATCCCAATTTACAAGAAGCTAATTTCATCAGGACTTAGGATTTGGGTTTACAGCGGGGACACAGATGGTAGAGTACCAGTTCTGTCAACAAGGTACAGCTTAAGTTCTCTAGCTTTGCCTGTCACTAAGCCATGGAGGCCTTGGTACCATGAAAATGAGGTTAGCGGGTGGTATGAAGAATATCAGGGGCTTACCTTTGCAACATTTCGAGGGGCAGGCCATGCAGTCCCCTGTTTTAAACCAAGCAACTCACTTGCTTTCTTCTCCTCCTTTCTCCTTGGAGAATCACCACCTTCTACAAAATNAGAACAAGGAAATGTAATCATCATATTGGGTTGCTCCTTGTGACCCCGTATGAAAATTTTGCTATTANATAGCAATTAGCAATAGCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00994	80627	84440	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006508 proteolysis

molecular_function
GO:0004185 serine-type carboxypeptidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000994s00025832.1	PF00450.17	Peptidase_S10	52	472	1.00E-140

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.128
SRR1783600	control	1.105
SRR1783602	moderate drought stress	2.151
SRR1811619	moderate drought stress	2.179

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.813
DRR006520	Root Summer glycyrrhizin high producing strain	11.843
DRR006521	Root Winter glycyrrhizin high producing strain	0.565
DRR006522	Root Winter glycyrrhizin high producing strain	0.562
DRR006523	Root Summer glycyrrhizin low producing strain	20.287
DRR006524	Root Summer glycyrrhizin low producing strain	20.518
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.112
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.115

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.190
SRR2868004	Drought Stress (root)	4.337
SRR2967015	Control (root)	5.208

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.075
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.000
SRR9715739	Root	2.948
SRR9715742	Root	23.767
SRR9715743	Root	20.810

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.048
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.278
SRR8400027	Control - Root	5.512