Gene detail

Gene detail information of Glyur000994s00025830

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G61140.3	0	SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related
NR	KHN46324.1	0	Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2 [Glycine soja]
COG	YP_003266234.1	2.00E-36	SNF2-like protein [Haliangium ochraceum DSM 14365]
Swissprot	tr\|Q9FNI6\|SM3L2_ARATH	7.00E-64	Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2
trEMBL	tr\|K7M0F5\|K7M0F5_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G25310.4}

Sequence

Transcript Sequence

>Glyur000994s00025830.1
CTCTGACTTAGGATGCTTGGTATTACCTTTATACTAAATTTTTCGATGTCATAGCAGTGCAGTCCCGAGGATTATTCATCAAAAAATGTTTCAACTAGTGAATCTGGCATCTGTGATACTGTTCAGATTCAAAATGGGTCTCAAGTGTTAGAAGAACCACATTTTTCTAGGTTGGACATAGTGGATTCAGTCACAAGCTGTTCTCCATTCTGTTCAGATGTGTCAGATTCTTGGGCCAGAGGTTCTGTTTGTTTATCCGATTCTGCAGCAAATTNTATGCTTGACTGTAAACATGAAAACCAGGGACCTCGATGTCAGGCTTGCTCTTCCCCAAATACTTTTCCTGGCAGTTTCAGGGACTTATTCTCTCTGGCTGAAAGTGATGAGATTTGCTACCCTGAAAGGACAGGAGCTTCTACACGGGAGATACCTGATAATGGTGTGGAAACAAGTTTGCCTGAGGCACATTCAAAAAATTTATCAGTTTGTGGAGATAACTTGAATATGAGTATATGGAAGGCTGAAAATGAGAGCCAATTCAAGCATGTGGGAGAGGACATTGAATCTGAACATGCTTCACTCGGTTCTATCATTGAGAATGGTGATGTAGATTTCGATGATTATGTTGAAAACATCATTGAAGGAGTTTCTGGGCAACAGGAAAATGACTCGTGTACATCTTTCGAAAACTCAGTCATGGATGCTGATAGATCTTTGCATGTTGCAACTTCAACCAATTATACTATTGGCCAAGGTTCCCATGTTCCGAGTGGTTTTATTGACTATCATCTATCTTTGAATTGTTACCACGGAACAGATGATGGACCCTTTGTTGCTGACTCATCTATTGGTATTTTGCCTAATGATATTTGTTCTCAATTATGGACAAATGAAGAAATGATAAAGGCTGAAAATGCAGAGTTCTATGCTGATATGGCATGTATGAGTAGTGTCATGCCCACAAGCACTACTGGGGAAATATCATTTCAAGATAGTCAAATTATGTTATCAGATAGTGATTATCCATCATTTTTTTATGATAATGTTATCTTTGATAATAAGACATCAGTGCCGCTTTCAACTTGTGCTTCATCCATGTCATGTGATGGAACTGCTAGTAATTTTCAAGGAATTATGGGCAATTTGAATATGAAATCTGTCAATAAATCTTTGTCCCATGCCCAAGCACCAATTGCCAGTGAGAAACAGTTTGATTGTGTTGAGAGAGGAGGAGGAAAAATGATTCAACTTAAACATATTGATTCTGATTTTTCAAAAGGTAAGTCTGAGAATTTCCATGTTGAGGATGACTCTGATGTTTGCATTATTGAAGGAATGAGTCACCCTTTTCTTCCAAGTCAGTCAGCAAACATTGGGAATTCCCTTAGTATATCTCAATCTTCTAGATATGTTGATTCCCAGCCTGACATGGTTGGGAGCACAAGGCTGAAGGCATGCGATGAGAGAAATATATTACAAGTTGCTTTGCAGGATCTATCTCAGTCAAAGTCAGAAGCTAGCCCACCAGATGGGTTATTGGCAGTTTCTCTTTTAAGACATCAGAGAATTGCTTTATCATGGATGGTTCAGAAGGAAACATCAAGTTTATATTGCTCAGGAGGAATTCTTGCAGATGATCAGGGACTTGGAAAAACAGTGTCAACTATTGCATTAATATTAAAGGAAAAACCTCCAATCCTTAGTGTGTTCCCTAGTGCCCAAAAAGGTGAATTAGAAACCTTGAATTTGGATGTGGACGATGACATGCTTCATCAGAATGGAGGAGTGAAGAAAGAATCTAATATGTATCAGGATGTGTCAAATAGATATTCAATCAAGAGCATGAATTTGTCGGTGCAAACAAAGGGAAGGCCATCTGCTGGGACCCTTATCGTTTGTCCCACTAGTGTCCTACGCCAATGGGCTGAGGAGTTGCATAATAAGGTAGCCAGCCAAGCAAAACTCTCTGTGCTAGTGTACCATGGAAGTAACCGAACGAAAGATCCTTATGAGGTGGCTAAGTATGATGTTGTCCTGACAACTTATTCCATTGTCAGCATGGAGGTCCCTAAGCAGCCTCTAGTTGATAAAGATGATGAAGAAAAGGGAATTTCTGAAGATCATGCTATACCAAGTAGGAAAAGGAAAAACCCTTCTAATTCTAGTAGAAGTGGCAAGAAGGGACTGGACAGCGCTGCTGCTCGGCCTCTTGCAAAGGTGGCATGGTTTAGGGTTGTCCTGGATGAAGCCCAGAGTATAAAGAATCACAAAACTCAAGTTGCAAGGGCCTGTTGGGGTCTTCATGCTAAACGTAGATGGTGTTTGTCAGGGACTCCCATCCAGAATTCAATTGATGATCTCTATAGTTACTTCAGATTTCTAAGATATGACCCTTATGCTGTCTATACNTCATTCTGTTCTACAATTAAGATCCCAATTAACAGAAATCCAACAAAAGGGTATAGGAAGCTACAAGCTGTCTTAAAGACAATTATGTTACGCCGGACCAAAGGCACACTTCTTGATGGAGAACCTATTATATCCTTGCCGCCTAAATGTGTAGAGCTGAAGAAAGTTGATTTTTCAAGGGAGGAACGTGATTTCTATTCTAGACTAGAGGCTGATTCACGTGCACAGTTTCAGGAATATGCTGATGCTGGAACTGTCAAGGAAAACTATGTCAACATTTTGCTGATGCTTCTTCGCCTTAGACAAGCATGTGATCACCCTCTGCTTGTCAAACGTTACAATTCTAACTCTTTATGGAGATCTTCTTTTGAGACGGCAAAGAAGCTTCCTCTGGAGAAACAAATCTCTCTTCTGAAATGTTTAGAGTCTTCCTTGGCTCTCTGCGGAANTTGTAATGATCCTCCTGAAGATGCTGTTGTTTCAGTTTGTGGTCACGTTTTTTGTAACCAGTGCATTTGTGAACATCTGACCGGTGATGACAACCATTGCCCTGCTACAAATTGCAAAAATCAACTGAGAACATCTTCGGTGTTTTCCAAAGTCACACTGAATAGTTGTCTTTCTAACCAGGGTTGTGATGATTTGCCTGGTTGCTCTGGTTCTGAAGTGGAAAATTTTGAGCCTTGGTCTCAGAGTCAGCCATATGATTCTTCTAAAATTAAGGCTGCCCTTCAGGTATTGAAGTCATTGTGTAAGCCACAGTGTGATGCCTCAAAAAGTATTTCCGCGCGTAGTACTTTCACAGAAAATAATGACTTCCCTGGGAACTCCTCTGATGCTAACAATAATGACTGCCCTGGGAACTCCTCTGATGCCAACAATGTGAAATCCTTCAAGGACTCTCCGGAGAGTCAAAATTTGTCAGGGAATAGAAGCTCCAATGATTCGGTTATTGTTTTAGGGGATAAAGCGATAGTGTTTTCTCAGTGGACGAGGATGTTAGATTTGCTTGAAGTGTGTCTTAAGAGTTCTTCAATTCAATATAGAAGGCTCGATGGAACAATGTCAATTGTTGCCAGAGATAAAGCCGTTAAAGATTTCAACACTCTTCCTGAGGTATCGGTTATGATTATGTCTTTGAAGGCTGCTAGTCTTGGCCTAAACATGGTGGCAGCCTGCCATGTTCTTATGCTAGATTTATGGTGGAATCCTACAACTGAAGACCAAGCAATAGATAGAGCACATCGAATTGGGCAGACTCGTCCTGTGACTGTTGTGCGGTTAACAGTGAGAGATACAGTTGAAGATCGTATTCTAGCACTGCAGCAAAAGAAGCGAAAGATGGTTGCATCTGCATTTGGGGAGGATGGAACTGGTGGTCGTCAAAGTCGCCTTACAGTGGATGATTTAAAATATTTGTTCATGATGTGATTAGACATTCATATTTACAGGCACAATTTTAATTTTTCAGATTGGTGATTCTTTTCCCTGGGGGGGCAGTTAACATCGTAGGTTTCTTTATAGTGACAGCAAAAGAAACAGGTCATTTTCTAACAATGGATGATTAAAATCAGTAACAACTAACAAGGTTTCTATCGAGGCTTACATGAAGATCATGTGAAATGTGTTTATAGTTAGAATAAGAAGTTTATTTCTTTGACCTGTAAATTATAGTTTAATCTCTCACATTTGTATAGG

Protein Sequence

>Glyur000994s00025830.1
MLDCKHENQGPRCQACSSPNTFPGSFRDLFSLAESDEICYPERTGASTREIPDNGVETSLPEAHSKNLSVCGDNLNMSIWKAENESQFKHVGEDIESEHASLGSIIENGDVDFDDYVENIIEGVSGQQENDSCTSFENSVMDADRSLHVATSTNYTIGQGSHVPSGFIDYHLSLNCYHGTDDGPFVADSSIGILPNDICSQLWTNEEMIKAENAEFYADMACMSSVMPTSTTGEISFQDSQIMLSDSDYPSFFYDNVIFDNKTSVPLSTCASSMSCDGTASNFQGIMGNLNMKSVNKSLSHAQAPIASEKQFDCVERGGGKMIQLKHIDSDFSKGKSENFHVEDDSDVCIIEGMSHPFLPSQSANIGNSLSISQSSRYVDSQPDMVGSTRLKACDERNILQVALQDLSQSKSEASPPDGLLAVSLLRHQRIALSWMVQKETSSLYCSGGILADDQGLGKTVSTIALILKEKPPILSVFPSAQKGELETLNLDVDDDMLHQNGGVKKESNMYQDVSNRYSIKSMNLSVQTKGRPSAGTLIVCPTSVLRQWAEELHNKVASQAKLSVLVYHGSNRTKDPYEVAKYDVVLTTYSIVSMEVPKQPLVDKDDEEKGISEDHAIPSRKRKNPSNSSRSGKKGLDSAAARPLAKVAWFRVVLDEAQSIKNHKTQVARACWGLHAKRRWCLSGTPIQNSIDDLYSYFRFLRYDPYAVYTSFCSTIKIPINRNPTKGYRKLQAVLKTIMLRRTKGTLLDGEPIISLPPKCVELKKVDFSREERDFYSRLEADSRAQFQEYADAGTVKENYVNILLMLLRLRQACDHPLLVKRYNSNSLWRSSFETAKKLPLEKQISLLKCLESSLALCGXCNDPPEDAVVSVCGHVFCNQCICEHLTGDDNHCPATNCKNQLRTSSVFSKVTLNSCLSNQGCDDLPGCSGSEVENFEPWSQSQPYDSSKIKAALQVLKSLCKPQCDASKSISARSTFTENNDFPGNSSDANNNDCPGNSSDANNVKSFKDSPESQNLSGNRSSNDSVIVLGDKAIVFSQWTRMLDLLEVCLKSSSIQYRRLDGTMSIVARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVVRLTVRDTVEDRILALQQKKRKMVASAFGEDGTGGRQSRLTVDDLKYLFMM

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00994	59535	65992	+

Gene family

Gene family	subfamily
Transcription Factors Family	SNF2
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003677 DNA binding

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000994s00025830.1	PF00176.18	SNF2_N	428	821	1.30E-73
Glyur000994s00025830.1	PF00271.26	Helicase_C	1052	1129	1.20E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.219
SRR1783600	control	1.230
SRR1783602	moderate drought stress	1.967
SRR1811619	moderate drought stress	1.876

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.333
DRR006520	Root Summer glycyrrhizin high producing strain	1.323
DRR006521	Root Winter glycyrrhizin high producing strain	6.968
DRR006522	Root Winter glycyrrhizin high producing strain	6.745
DRR006523	Root Summer glycyrrhizin low producing strain	2.626
DRR006524	Root Summer glycyrrhizin low producing strain	2.646
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.033
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.973

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.455
SRR2868004	Drought Stress (root)	15.557
SRR2967015	Control (root)	16.148

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	12.948
SRR9715740	Leaf	7.498
SRR9715741	Leaf	15.678
SRR9715739	Root	0.741
SRR9715742	Root	3.363
SRR9715743	Root	3.603

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	44.738
SRR8749028	MeJA induced 9h	105.248
SRR8749029	MeJA induced 9h	88.625
SRR8749030	Uninduced	28.979
SRR8749031	Uninduced	155.608
SRR8749032	Uninduced	104.605

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.640
SRR8400027	Control - Root	4.723