Gene detail

Gene detail information of Glyur000993s00027661

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G10060.1	8.00E-73	FKBP-like peptidyl-prolyl cis-trans isomerase family protein
NR	XP_004497572.1	2.96E-98	PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP16-4, chloroplastic-like isoform X2 [Cicer arietinum]
COG	YP_001566074.1	3.00E-24	FKBP-type peptidylprolyl isomerase [Delftia acidovorans SPH-1]
Swissprot	tr\|Q9SR70\|FK164_ARATH	7.00E-91	Peptidyl-prolyl cis-trans isomerase FKBP16-4, chloroplastic (Precursor)
trEMBL	tr\|I3SW13\|I3SW13_MEDTR	2.00E-95	Peptidyl-prolyl cis-trans isomerase {ECO:0000256\|RuleBase:RU004231}

Sequence

Transcript Sequence

>Glyur000993s00027661.1
AAGAATCAAAATTGTGGATGAAATCAACCACGTTATCCTCTCTATATTCTCTCTCTCTCTCTCTTTCCTCTCAAAACGAAATAAAGAAAAAAAGGAGGAAAAAGAAAAGCAAAATAAACTAGCTAGATTCTGATCTCACTGTACAAACCAAAATCATGGAGGTCTCTCTTTTGAGCCATCAGCACCATCCTAAGCTCCTTCATTGCTCTCTCACCTCCATTCTCTTGACAAGTTACCATATTGCAGCTGCTCATATGCTTCAGAACAACCAGTCACAGTGTCTTTACAGATTGAAGGAAGGAGATCAGCATTACTCAGTTCTAAGAGGAGCCAAAATTCCTGAAAGTGATTACACAACCTTGTCCAATGGTCTGAAGTACTATGATCTGAAGGTTGGGAATGGAGCTGAGGCTGTAAAAGGATCCCGTGTTGCCGTTCACTATGTTGCTAAATGGAAGGGTATCACCTTTATGACTAGTAGACAAGGAATGGGCGTTGGAGGAGGAACGCCCTATGGATTTGATGTAGGCCAATCTGAGAGGGGAACTGTCCTCAAAGGGTTGGATTTAGGAGTACAGGGCATGCGAGTAGGAGGCCAGAGACTCTTAATTGTTCCTCCTGAACTTGCCTATGGAAGCAAAGGAGTCCAAGAAATCCCTCCAAATGCAACAATAGAGTTGGATGTTGAACTGCTTGCCATCAAGCAAAGCCCATTTGGGACTGGCGTAAAGATCGTTGAAGGCTAATGCAATGATTTAATATTCAGAGTGCTAAGTTGGCAAATTATAAGAAGACAATGATGTCCTCGCTCCCAGACAGCCCTTATTTTTGCCCTTGAAGTGAATGAACCTAGAATTTAAACCCTTTCTGAACTGGCAAATAAGAAACATCAAAAGATTGAAACGTTGCTTGAAAAATTTGATTATTTGGGGATTCGGGACTTGTGTTTGCTAGGAGTCAAAAAGTTCATGAGATGTGACTACAAAAATATAAACAATTCCAACCAGATTAGAAAATATAAACAATTAAAAGAAGGAAAAAAGAAAGAAAGAAAACAGTATTTGTTTTCATTTTGTGTTCTTGCTCCCCGTCAATTGTTTCCAAGCNGAGACAGTGATTCATGTTGTTCTACCCATGTTCACTGCCACCAATTCTTTCAACTTATAAATTTCATGTCATATGTACCATCAATAATAGTAAACAATCAAANTTTTCTCGAAGTGACACTAGTTCTTCCAAATATCTACAAGAAAAACTCTAGTGCTAGCACCTTCACATACACTTCACTCTTCAAAATGGTAGCCTTGAAGCCTTCCTCAAACTGGTAGGACAACCCAGAAAGTGAGCCGGTGCCTGAAATTTATCTGCGGTAGCGGTAGCGTTTGAAATTGAAGTAAACGTGCAGAATTCCACGTTCAAACGTGCATTTAAAACCTTTCTTGTGAGAATATTCCCATTCTTTGTTTACAATGCGGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00993	50730	59105	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006457 protein folding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000993s00027661.1	PF00254.23	FKBP_C	85	180	1.30E-24

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.962
SRR1783600	control	4.763
SRR1783602	moderate drought stress	8.153
SRR1811619	moderate drought stress	8.430

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.153
DRR006520	Root Summer glycyrrhizin high producing strain	4.864
DRR006521	Root Winter glycyrrhizin high producing strain	6.793
DRR006522	Root Winter glycyrrhizin high producing strain	7.511
DRR006523	Root Summer glycyrrhizin low producing strain	6.591
DRR006524	Root Summer glycyrrhizin low producing strain	6.363
DRR006525	Leaf Summer glycyrrhizin high producing strain	84.468
DRR006526	Leaf Summer glycyrrhizin high producing strain	84.157

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.983
SRR2868004	Drought Stress (root)	5.324
SRR2967015	Control (root)	3.992

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	72.393
SRR9715740	Leaf	88.937
SRR9715741	Leaf	78.612
SRR9715739	Root	0.075
SRR9715742	Root	1.383
SRR9715743	Root	1.802

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.946
SRR8749028	MeJA induced 9h	5.021
SRR8749029	MeJA induced 9h	8.865
SRR8749030	Uninduced	11.905
SRR8749031	Uninduced	5.375
SRR8749032	Uninduced	6.802

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.649
SRR8400027	Control - Root	3.460