Gene detail

Gene detail information of Glyur000990s00032248

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G37770.2	5.00E-127	NAD(P)-linked oxidoreductase superfamily protein
NR	XP_004506626.1	0	PREDICTED: aldo-keto reductase family 4 member C9-like isoform X1 [Cicer arietinum]
COG	YP_007469167.1	3.00E-89	aldo/keto reductase, diketogulonate reductase [Desulfocapsa sulfexigens DSM 10523]
Swissprot	tr\|Q0PGJ6\|AKRC9_ARATH	1.00E-171	Aldo-keto reductase family 4 member C9
trEMBL	tr\|I1J6Z7\|I1J6Z7_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA01G24931.1}

Sequence

Transcript Sequence

>Glyur000990s00032248.1
CTTTTTCCATTCAACAACAAGATTCCATTTTCAAGAGTCTTCCTGAGGAGACCAAACCAAAATCAAATCGCGCCGTTCCCTTTTCTTCTCTCTTCTGCTTCTTCCGTTTCAAAACCCTCCACTTCTCCCTCTCCACCCATTCACTGTTAATTCCTTCAGTTTCTTTTTTTGCCTATAAATTGCATCCAAACGTTAACCAAACATCAAAGATCCCCCCATCCCATTGCCATTGAGTACTGAATAGAGCTATCTAAGTAACCAAACTAGATTGTTATTGTTATTGTTTACTACTATTATTGAGAGAAAAATGGCGGCCACAGCTATCAAATTCTTTCAGTTGAACACAGGTGCCAAAATCCCTTCCGTTGGTTTGGGAACCTGGCAGGCTGAACCTGGTGTTGTAGCCAAAGCTGTCACCACTGCCATCCAGGTTGGATACAGGCATATTGATTGTGCTCAAGCCTATAGTAATCAAGCAGAGATTGGTTCTGCACTCAAAAAGCTTTTTGAGGATGGTGTGGTTAAGCGTGAGGAGTTATGGATCACCTCCAAACTCTGGTGTTCAGATCATGATCCAGAAGATGTGCCAAAAGCATTGGATAAAACTTTGACGGACTTGCAACTTGACTATCTTGACCTCTATCTGATCCACTGGCCAGTCCGCACGAAAAAGGGATCAGTTGGATTTAAGCCTGAAAATCTTGATCAACCAGACATACCCAGCACATGGAGAGCAATGGAGGCACTATATGACTCTGGCAAGGCTAAAGCCATAGGAGTGAGCAATTTCTCTTCAAAGAAGCTTCAAGACCTATTGGACATAGCACGTGTGCCTCCCGCTGTTAACCAGGTGGAATTGAACCCAGGATGGCAGAACCCAAAGTTGCATGCATTCTGCGAATCCAAAGGAGTTCATCTATCTGGATATTCTCCTCTTGGCTCACCTGGAGTATTCAACAACAGTGACATCCTCAAGAATCCAGTTGTCAAAGGGGTTGCAGAGAAATTGGGGAAGACACCAGCACAAGTTGCCCTTCGATGGGGGCTGCAAATAGGACACAGTGTGCTTCCTAAGAGCACTACAGAGGCCAGGATCAAGGAAAATTTCGACGTCTTCGATTGGTCTATTCCTGAAGACTTGATAGCCAAGTTTTCTGAAATTAAGCAGGCAAGAAGCTTTTTAGATAGGCTAATTAAGGGGACTTTTGCTGTTAACGAGACCTATGGTGCCTATAAGACCCTTGAAGACCTCTGGGATGGTGAACTGTGAGCAATTTGTAACATTGACATGAACACGAATAATACACTGCCAGCAGTTATGTTTCCAGTAGTATTTTGAGGTTCAGACAACTGCTGTTATTTTCTCATTGATGATAATACTACTAAACAATG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00990	78034	81217	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function
GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000990s00032248.1	PF00248.16	Aldo_ket_red	20	285	2.40E-54

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	25.331
SRR1783600	control	25.280
SRR1783602	moderate drought stress	10.580
SRR1811619	moderate drought stress	10.684

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	20.068
DRR006520	Root Summer glycyrrhizin high producing strain	19.222
DRR006521	Root Winter glycyrrhizin high producing strain	21.969
DRR006522	Root Winter glycyrrhizin high producing strain	21.573
DRR006523	Root Summer glycyrrhizin low producing strain	33.557
DRR006524	Root Summer glycyrrhizin low producing strain	33.718
DRR006525	Leaf Summer glycyrrhizin high producing strain	26.088
DRR006526	Leaf Summer glycyrrhizin high producing strain	26.087

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	92.492
SRR2868004	Drought Stress (root)	175.571
SRR2967015	Control (root)	66.304

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	36.050
SRR9715740	Leaf	31.242
SRR9715741	Leaf	35.094
SRR9715739	Root	15.684
SRR9715742	Root	32.795
SRR9715743	Root	29.024

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	910.757
SRR8749028	MeJA induced 9h	981.501
SRR8749029	MeJA induced 9h	1019.110
SRR8749030	Uninduced	2108.572
SRR8749031	Uninduced	2561.729
SRR8749032	Uninduced	1406.481

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	64.499
SRR8400027	Control - Root	50.206