Gene detail

Gene detail information of Glyur000989s00020270

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G40080.1	7.00E-69	ENTH/ANTH/VHS superfamily protein
NR	XP_003524256.1	3.09E-169	PREDICTED: putative clathrin assembly protein At4g40080-like [Glycine max]
Swissprot	tr\|Q8L936\|CAP16_ARATH	3.00E-94	Putative clathrin assembly protein At4g40080
trEMBL	tr\|I1K4G2\|I1K4G2_SOYBN	1.00E-169	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G30880.1}

Sequence

Transcript Sequence

>Glyur000989s00020270.1
ATGACAAAACTCACAGACCTAATAGGCACACTGAAGGACAAAGCCTCGCAGAGCAAAGCGGCGTTGCTGTCCAAACGCACCACACTCGCTCTCCTACGCGCCACCAGCCACGACTCCTTCACCCCACCCACACGCAAGCACCTCTCCACGCTCCTATCCTCCGGCGACGGCTCACGCGCCACCGCGTCCGCGGCCGTGGAGGTCCTCATGGACCGACTCCAGAGCACCCACAACTCCGCCGTGGCACTGAAGTGCCTAATCGCCGTCCACCACATCATCCACCACGGTAGCTTCATCCTCCAGGACCAGCTCTCCGTGTACCCCTCNACCGGCGGAAGAAACTACCTAAACCTCTCCAACTTCCGACAGAACACCAACCCAACATCGTGGGAACTCTCCTCCTGGGTCCGATGGTTCGCACAACACATCGAGCAACTCCTTTGCACTTCCAGGATCCTAGGATCCTTTTTCCTCGGGAATTCCTATTCCGACAGCGAAGACAGGGTTTCGGGTCTCACGAACGCGGATTTGTTGGCGGAGTTTGACTCATTGGTTTCACTGGTGGAGGGGTTTTGCAAGAGACCGGGTCACGCGCCCAGCGTGGGGAACAAGTTGGTGGATGAGATTGTGGAGTTGGCGCGTGGGGATTGGGGGGTGGTNGAGAGGGAGGTGAGTGTGCGAGTGGGGGAGTTTGGGGAGAGGTTGGGGTGCTTGAAGTTTGGGGAGGCGGTGGAATTGGTTTGTTGTGCGAAGAGGTTGGAGGAGTGCGAAGAGAGGGTGAGGGTGATGATGATGTTGGAGTCGTCGAGTTTGTGGGATTTGGCGAGACAGGTAAAGGAAAAGGCTGGGATGATGGTGGTGTACAAGGAAGACAGTAGAAAGGTGCACAGGGAGGGCAGAAAGTTCCAGGTCAGTGAATCGGAACGGTTTTCTGGCCGGGTTATCAATTCCCGTGATTTCGTCCGGTTTCCCTCGGGGAGGTTGTTGTTGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00989	96364	97356	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005543 phospholipid binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000989s00020270.1	PF07651.11	ANTH	29	147	3.30E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.569
SRR1783600	control	6.736
SRR1783602	moderate drought stress	14.447
SRR1811619	moderate drought stress	14.291

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	44.605
DRR006520	Root Summer glycyrrhizin high producing strain	44.127
DRR006521	Root Winter glycyrrhizin high producing strain	6.752
DRR006522	Root Winter glycyrrhizin high producing strain	6.306
DRR006523	Root Summer glycyrrhizin low producing strain	65.280
DRR006524	Root Summer glycyrrhizin low producing strain	65.335
DRR006525	Leaf Summer glycyrrhizin high producing strain	19.392
DRR006526	Leaf Summer glycyrrhizin high producing strain	19.474

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	13.992
SRR2868004	Drought Stress (root)	15.914
SRR2967015	Control (root)	43.738

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	111.356
SRR9715740	Leaf	80.684
SRR9715741	Leaf	103.730
SRR9715739	Root	122.439
SRR9715742	Root	125.286
SRR9715743	Root	114.288

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	15.290
SRR8749028	MeJA induced 9h	27.888
SRR8749029	MeJA induced 9h	27.860
SRR8749030	Uninduced	11.575
SRR8749031	Uninduced	2.725
SRR8749032	Uninduced	7.174

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	13.284
SRR8400027	Control - Root	20.573